Pinq008997.1
Basic Information
- Insect
- Prosopocoilus inquinatus
- Gene Symbol
- egg
- Assembly
- GCA_036172665.1
- Location
- CM069872.1:161794-166389[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.19 1.1e+03 0.2 0.0 25 42 632 649 603 656 0.84 2 2 4.7e-15 2.8e-11 43.8 0.0 5 75 679 742 676 744 0.91
Sequence Information
- Coding Sequence
- ATGGCGGACGTGATGGAGGTGGACGCCTCGGAGGATGAAGCCTTCGAGAAATTGGGGTCAACCCACGACGAGGCGCCTGAAAGCGAAAGCAGAAAAAGCGGCGACGTTGTAGTGCTCGACGACGAAGACAATCCGGCAGACTGCGACGTCATCGACTTGGTCCGCACGGAAATGACCGGGAACACGAAGTGCATCAACTACGCCTGCAAGAGCGGCATGAACATGTTTGAGCCCCCCGGATTTTGCCTGTCCTTCTATCGGGTGCGCAACAAGCTCAACAAGCGCCAGCAAATCTGCTCGGAGTGCTACGAGAAAGCCATCGAGCATTACGACGCCCTCATGAACTCCCTGGTGAACAAGACCCCCTTGCTCGACGTTGAGATTCCCTTTAGGAATGACGTGGTCGAGATCGATGATTCGGATTCTGAAGAAGAAATCGACGAAGACAATGCCATAGACGATCGCACCATTGACCTCCTAACCGAATGTCTAGGCGACACGCTCATCAAGGTCATGGACGAATACGACTTCAATGGCCAGGTCAAGCAATCCATAGGCATTCTGCACAAGAACGTCGATACAATCAAAGATTCGTTGCTCGAGGTGCAAACCATGTTCAAGAGCATAAGGACGGAAACGGACAACATGATTTTCGAACTGTCCAACATATTGAGGCCGGACAACGTCGACCTGCCCACGCTGGAAATAACGGAGAAGAAGGTGCAGGTCGTGAAGACTGGCCCGCAGATCAGGCCTAAGCTGCAGCATACGAAATCGACTGCGCCTTCTCCGAAGCAGGTCGTTCAGAAAGTCGAGCCGAAAATTCTGACGAGGCCCCCACAGAAAGTGCTTGCCTTGAAAACTCCACAACAAGAAGCAGGCGTTGAAAAACGTAGTGAGGCAGGAGCCAGGTCTAGTGATGGCAGCAGCAAAAGCATTGATTTGCCTGCGAAAGGGGCTCTGGTGAAGCCGTTGCTGAAAATAGGAGAGATTTACTTTGCAAGTCGTGTGGAACTAGTCGGAGGGGCGTGGGTTAAAGTCCGTCTGTCGGACATCCTACCAGCGGGCACCAAGCGAGATGGCCAAATGTACAGCCACAACATGTACTGGGTGACCATCGAGAACAAGCAGCGCAACACCACCTCCAAGATCGTGTCCGGCAAAGAAATCGCTTACTCGACCTGTTCGCCTGTCCAACTGGAAGTAGGGACGAGAGTCATCGCGGTGTTTCACGAAGTCGTGCCGGCCAGCGAACCGAAAAAGCACAGGAAGGACACCTACTACCCAGGAATAATTGCGGAGCCCCTGCAAGCTGCCAACAACTACAGGTACTTGATATTTTTCGACGACGGTTACGCCCAGTACGTGACGCACAACTACGTCTTTCCCATATACGAAGTCAGCAAGGACGTCTGGGAGGACGTCAACATTAATTCGAGGGCCTTTATAAAGAAGTACCTTGAGAACTACCCCGACAGGCCCATGGTCAAGTTGATGAAAGACCAGACGGTTCGCATCGAATACAACGGTAAGTGGTGGGTGGCGACGGTGATGGACGTCGATTGTTCTCTCGTGAAGATGTTCTTCGATGCCTCCAGTCGCGTCGAGTGGATCTACAGGGGCTCGACGAGGCTCAACCCCATGTTCAAAGAGGAGCAGGCCGCCACCAGTCGCTTACAGCACAGGCAGAGGATCACCAGGAAGATCGTCAATTCCTCGAGTTCTGCGCCGTACGTGCAATACACCAGATCTGACATGTCCTCATCGCTGAGCCAACAACAGCAAGAGCACCACCAGCAACAACAGCGGTCGGTGGCCAGGAAGAGCACGTCGAAGCCCGTGCAGATAAACAACAGCATAACGTCGAACACCAATCCGTTCCTGCCGGATTCGAACCGCGAGGCGCCCGCAACGAAAATCGTCTACTACACTCCGAGGAGGCAAAAGCCGAAGACGAACGTGTACGTGCCCCACACTTGCAGCCCCAAGTGCAGGGACTACATGTACTGCGTGCTTTCGCGCCTCAAAGGGTACAGTCCGCTTTCGAAGCCTCTCTTGTGCGGCTTCTATCGCCTGCTCTGCAAGATCAAGAACAAAAAGTCGGTGATATACAAGGCCCCCTGCGGAAGGACGCTGCGCAACATGCCCGAGGTGCATTTGTACCTGCGAGTCACCAAGTCCGATTTAACCGTGGACCTCTTCGATTTCAACGTGTACGTGCGCTGCCTGGCGGAGTTCATGGTCGATCAGAAGAACGTCTTGGTGAAGGATCTATCGCAagGCCTAGAAGAATGTCCAATCACCGTGGTGAACTACGTCGACTCGTCCCACCTCAACTTCTGCAATTACTCGACGCGCAGAGAGCCCATGGAGGGCGTGGAGCTGAACCTAAACCCGGAATTCTTGTGCGGATGCGACTGCACCGACGACTGCATTgACCGATCGAAGTGTACTTGCTGGCAGCTGACGTTGAACTGCCTGAAGTTTATGGACAAGGACACGAACCCGGAAACCCTCGGCTACCAGTACAGGCGTCTCCCCGAACCGATATTCTCAGGAATCTACGAGTGCAACTCCAAGTGTAAGTGCGCTTCCACGTGCTTGAACAGGGTCGTCCAGAATCCACTGCAACATAAGCTGCAGGTCTTCAAGACCGACTCGAAGGGTTGGGGCATTCGCTGCCTGAACGACATACCGCAAGGTTCTTTCGTCTGCATCTACGCCGGGGCCCTCCTCACCGACCACATGGCAAACGAAGGCGGCAAGTCGTACGGCGACGAATACCTGGCGGAACTGGATTTCATCGAGACCGTGGAACGGGCCAAGGAGGACTACGAGGAGGAGGCTTATAACAGCGACAACGAGAAGGAGAACTCCCCCGAGGAATCGGCAGAGGAGTCCGGGATGGAGGAGGACGACGATGAAGGCGTCGTGAGGACTAGGAGTTACGTCGATGACAGGGACTTCGTACCCAGTATATACACGAAAAGCGTCGGGGACACTTCCGGAATTCGCACCAGGTTGAGGAAACGGAACGTCGCTGACGTGAAGCCCCCAAAAGTAGAGGTGCCGAAACCCCAGGAGAAACCGAAAGCGAAGCCGGTGGTCGAAAGTTCGGACGACACGGTCACGATCAGCGACGACGAAGACTACGCGCCGAGAGAACCGTCCAGCTTCAACCCCAAGAGCGACACGAATTTGGACGATAGCAGGGAGCAGAAGTACAAGTCGGTTCGGGAGATGTTCGGCGAGGATGAAGCCGTTTACATCATGGACGCGAAGAATACGGGCAACATTGGACGGTTTCTGAACCATTCCTGTACGCCCAACATATTCGTGCAGAACGTCTTCGTCGACACCCAGGACGTACGCTTTCCTTGGGTGGCTTTCTTCGCCATGAGTTACATACGCGCTGGCAGCGAGCTGACCTGGAACTACAACTACGATGTCGGCAGCGTGCCGGGTAAGGTGTTGTACTGTTATTGTGGATCGGCGGAGTGCAAGGGACGTTTACTGTAA
- Protein Sequence
- MADVMEVDASEDEAFEKLGSTHDEAPESESRKSGDVVVLDDEDNPADCDVIDLVRTEMTGNTKCINYACKSGMNMFEPPGFCLSFYRVRNKLNKRQQICSECYEKAIEHYDALMNSLVNKTPLLDVEIPFRNDVVEIDDSDSEEEIDEDNAIDDRTIDLLTECLGDTLIKVMDEYDFNGQVKQSIGILHKNVDTIKDSLLEVQTMFKSIRTETDNMIFELSNILRPDNVDLPTLEITEKKVQVVKTGPQIRPKLQHTKSTAPSPKQVVQKVEPKILTRPPQKVLALKTPQQEAGVEKRSEAGARSSDGSSKSIDLPAKGALVKPLLKIGEIYFASRVELVGGAWVKVRLSDILPAGTKRDGQMYSHNMYWVTIENKQRNTTSKIVSGKEIAYSTCSPVQLEVGTRVIAVFHEVVPASEPKKHRKDTYYPGIIAEPLQAANNYRYLIFFDDGYAQYVTHNYVFPIYEVSKDVWEDVNINSRAFIKKYLENYPDRPMVKLMKDQTVRIEYNGKWWVATVMDVDCSLVKMFFDASSRVEWIYRGSTRLNPMFKEEQAATSRLQHRQRITRKIVNSSSSAPYVQYTRSDMSSSLSQQQQEHHQQQQRSVARKSTSKPVQINNSITSNTNPFLPDSNREAPATKIVYYTPRRQKPKTNVYVPHTCSPKCRDYMYCVLSRLKGYSPLSKPLLCGFYRLLCKIKNKKSVIYKAPCGRTLRNMPEVHLYLRVTKSDLTVDLFDFNVYVRCLAEFMVDQKNVLVKDLSQGLEECPITVVNYVDSSHLNFCNYSTRREPMEGVELNLNPEFLCGCDCTDDCIDRSKCTCWQLTLNCLKFMDKDTNPETLGYQYRRLPEPIFSGIYECNSKCKCASTCLNRVVQNPLQHKLQVFKTDSKGWGIRCLNDIPQGSFVCIYAGALLTDHMANEGGKSYGDEYLAELDFIETVERAKEDYEEEAYNSDNEKENSPEESAEESGMEEDDDEGVVRTRSYVDDRDFVPSIYTKSVGDTSGIRTRLRKRNVADVKPPKVEVPKPQEKPKAKPVVESSDDTVTISDDEDYAPREPSSFNPKSDTNLDDSREQKYKSVREMFGEDEAVYIMDAKNTGNIGRFLNHSCTPNIFVQNVFVDTQDVRFPWVAFFAMSYIRAGSELTWNYNYDVGSVPGKVLYCYCGSAECKGRLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00464863;
- 90% Identity
- iTF_00464863;
- 80% Identity
- -