Pinq003600.1
Basic Information
- Insect
- Prosopocoilus inquinatus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_036172665.1
- Location
- CM069870.1:6999572-7014843[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.16 5.8e+03 -2.8 2.2 230 284 167 225 150 228 0.59 2 3 2.4e-106 8.4e-102 341.5 34.1 1 300 298 593 298 593 0.94 3 3 0.018 6.4e+02 0.4 3.9 120 174 591 642 590 666 0.77
Sequence Information
- Coding Sequence
- ATGGAGCGCAGTGATAGTGTCGAGTCTTTGGACGATATTCTGAACGATTTAAATTCGGATAGTGACGAAAGCTTCACGGACAAATCCATTACGACGGTGAGCGTCGGTGATGCAGTGACTAGTCGAAAAGTGAAGACGCTTAACACGAGTGTCGATGACCAAAACAGAAGCCAGTTAGAACGAAAGGAGGAAAACGATAAACCTAAAGGATTCGAAAGGAATGATCCTAAGGAAGTGCTTCAAGTTGACAATGACGATGGCGAAGAGgaagatgaaaagaaaaatgaatcaaaagTCTCCTCCTCCTCCAGTATTGGTAACGACCATAATAGAAGCCAGttagaacgaaaagaaaatgagaaagaaCCTACAGAAGTTGAGAGAATCGAACGTAAAGAAGTGCACCAAGTGAacgttgatgatgatgatgacgatggtGGAAGAGAAGttgatttgaaaaatgaatcaaaaactgATGAGAACGTCGTcccaaaaacagaagaaaaacaagagaTTACTGAAGGTGAAAATATGGTATTATTAAATAAGACTGATATCCAATCAGAAGAAATAGCTCAAATTAAAATAGAAGAGGAAGCTTCTACGGAGAAAGGAGACCAAATAGAACTGAACAACAACGTCCTTGATGTCAATCAAAATCAGAACAAATCGATGGTTATAGAAGGCGTCACTGAAAGTGAAAGCAACGACAATGAACTAAGCAATAGCTCCACGGAAAATGAAGTTAAATTACGCCTGGAAGGAGCTACTGAGGATGATACTGACGATTTCGAAGAAACGAGGGCGGTTAAAGTTAGTAGAAGTCTTAGTATGCGTTCGCACAACGAAGAGGACATCATCAATCAGTTCCTTGATGTGTCTAATGATGACGCTGAAGCACGACTGTTGGCGAGGCGGCAGGCCAGGGCCGAAGCAAGGGAGATTCGCATGCGAGAATTGGAACGCCAGCAGAAGGAGCAGGAGGAAAATGCGGATAGGCAGTTTGACATGCTGGCAGAGCCGGTGGCAAGGGCTGCACGATCTGCCGGATCGAGGTATCTTTCGAGCAGAAGAAGTTCAGAGGATTCGCTCGAGGATGGAGGCAGTCTTATGGGTTTACGGCACGAGCTCAAAGAGGTGGAGGAGAAGTTCAAAAAGGCCATGATAGCAAACGCTCAATTAGATAATGATAAGGCTGCGCAGACATATCAATTGGAACTACTTAAAgatagattagaAGAACTAGAAGAAGAACACTCTCAACTGAAAAGAGAACACCGTGATAAATGTAGGGAACACGAGCAATTAACTAGGTTATCTGCGAGACTCAAAGATGAATTGGCTGTCGCTAAGGCCGAATTGGAAGAAAGAGATAGGCTCATCGAGGAGAAGGGCTTGGTCATAGTGGGTGAATCCCTTTCCCCTGATGAAGATCTGGGGACATTAGAGGGAGCTGTCAACGGACTTAGTACGCCGAAGAAAGCCTTAGTTAGTGTACAAAATGCACAATTATTAGAAAATGCCGGAGAGGGTAGTTTAGATGTACGGCTGGAACGTTTTGCGAAAGAAAAAGTGGAATTGCAGGATCAGATAAGTCACTTAAAGTTAGAGTTGGAAGAGGAGAGAAGCAAGAGGCGGAAGTCCAATGCGTCGGGGATCACGTTGAATGGGCCTACTTCGGATTCTGATTACGATGCTGCTGATTTGCAAAGAGAAGTTAGCAAGCAACTGGCAGAATATAAATTTAGGGCACAAAAAGCAGAGCAAGACGTTGCTACTTTACAAGCAACTGTGGCGAGGCTGGAAAGCCAAGTGATAAGGTATAAGTCTGCCGCTGAAGTATCTGAGAAATCAGAAGAGGCTTTGAAGGCAGAGAAAAGGAAGTTGCAGAGAGAGGCACGGGAAGCATTGAGTAGGGCGGAGGAACTGGAAACGTCCAATACTCACTTGCTGAAGCGATTGGACAAACTAAAAACTGCAAAGTCGGCCTTGCTTAAAGAACTCTGA
- Protein Sequence
- MERSDSVESLDDILNDLNSDSDESFTDKSITTVSVGDAVTSRKVKTLNTSVDDQNRSQLERKEENDKPKGFERNDPKEVLQVDNDDGEEEDEKKNESKVSSSSSIGNDHNRSQLERKENEKEPTEVERIERKEVHQVNVDDDDDDGGREVDLKNESKTDENVVPKTEEKQEITEGENMVLLNKTDIQSEEIAQIKIEEEASTEKGDQIELNNNVLDVNQNQNKSMVIEGVTESESNDNELSNSSTENEVKLRLEGATEDDTDDFEETRAVKVSRSLSMRSHNEEDIINQFLDVSNDDAEARLLARRQARAEAREIRMRELERQQKEQEENADRQFDMLAEPVARAARSAGSRYLSSRRSSEDSLEDGGSLMGLRHELKEVEEKFKKAMIANAQLDNDKAAQTYQLELLKDRLEELEEEHSQLKREHRDKCREHEQLTRLSARLKDELAVAKAELEERDRLIEEKGLVIVGESLSPDEDLGTLEGAVNGLSTPKKALVSVQNAQLLENAGEGSLDVRLERFAKEKVELQDQISHLKLELEEERSKRRKSNASGITLNGPTSDSDYDAADLQREVSKQLAEYKFRAQKAEQDVATLQATVARLESQVIRYKSAAEVSEKSEEALKAEKRKLQREAREALSRAEELETSNTHLLKRLDKLKTAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -