Pinq023617.1
Basic Information
- Insect
- Prosopocoilus inquinatus
- Gene Symbol
- bab1
- Assembly
- GCA_036172665.1
- Location
- CM069876.1:35243284-35275508[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.8e-11 7.9e-09 36.0 0.0 1 39 382 421 382 425 0.90 2 4 1.7e-12 7.4e-10 39.3 0.1 1 39 436 474 436 477 0.95 3 4 4.2e-18 1.9e-15 57.2 0.0 1 45 491 536 491 536 0.98 4 4 5.3e-16 2.4e-13 50.5 0.0 1 40 543 583 543 587 0.92
Sequence Information
- Coding Sequence
- ATGTCTGGTCAACACTATTGCCTGCGCTGGAACAATTACCAAAGCAACATGACCACGGTATTTCATCAACTGTTACAGAACGAAGCCTTCGTGGACGTAACTCTAGCCTGTAATGATCTGTCTTTGAAAGCGCACAAGGTAGTTTTGTCGGCGTGCTCCTCGTACTTTCAGAAACTCCTCTTAGAAAACCCCTGCAAGCATCCCACGATCATAATGCCGCAAGACATCTGCTACGCCGATCTCAAATTCATCATCGAGTTCGTTTACAAAGGAGAAATCGACGTTTCCCAAGCGGAGTTGCAGTCCCTGTTGAAAACTGCCGATCAACTCAAAATCAAAGGCCTGTGCGAATCGCCCGAAGAAAAAGAGAACTCCGAGACCGCGGCCTTCCCCTTCATAACGAGAGGCTTCCCCAAACTGAGGAGGGTAGCGTCTCCGAAACAGTTCAAGCCCTTGGACAACAACCGGAAATTAAAGTACAAGAAGCCGGAGAGGAAGCGCACTACGGACAACGAAGACAAGGATAATAACAAAGACAGCGTCATCGTGAGTAATTCGTCCGAGGACGAAAATGAAATGCCAATAGCCCTGGACGAGGAGAGTAGAAAGAGGAAACTGAGCGAATCCCAAAATAAGCCGCTGAATATGAGTAGTCATGCGGGTATTTTGACGGGACAGACTTTCTCCTTCTCCCAGTTCGGTGTGGACAATGAAGATTTTCCTCCAGAACCGCCGGCCCCAACGGCCATACCCGTCGGGAATGTAGACATGGAACACTCACCGACCAGATCGCTCCTCACCAACTCGTCCATCCACAGAACCGACCTGTCAGATTCGCACATAAAATAtagcgaaattaaaaaagagccGGACATCAAATTCGAAACGTTGCGCTCTTACGACCAAGAATCCTTGTTGGACATGGAGGGCTCACACATGTCCGGTCCGGATCATTCGATGGACAGTCACGATGATCCGGAACATGGAATGCACACGATGATGATCACGCCGGAATTAATGGGTATGATGTCGACGGTACCATCCAGATTAGATTCAAGTTGCAACGACATGTCTATGAAGAGCAACGGACACACGGACCAACACTCAACCGGAAGGGCGCATGGCGGAGGACCAAAGACATGGACGCAAGAAGACATGGAGTTGGCATTGGATGCCTTAAGAAATCATAATATGAGTCTGACAAAAGCGTCAGCGACATACGGAATTCCATCCACGACGCTCTGGCAGAGAGCACACAGATTAGGCATAGACACACCAAAGAAAGAAGGCCCAACGAAATCATGGACCGAAGAGAACCTAAACTCGGCACTCGAAGCCTTGAGGACGGGCACAATATCCGCAAACAAAGCCAGCAAAGCGTATGGCATACCAAGTAGCACACTGTATAAAATAGCCAGGCGGGAAGGCATAAGGTTAGCGGCGCCTTTTAATGCAGCTCCGACGACATGGACGCCGGAGGATTTAGAAAAGGCCTTGGAATCAATTAGATCTGGTCAGACATCCGTTCAGAGGGCTTCCACGGAATTTGGAATACCGACGGGGACCTTGTACGGGCGGTGTAAGAGGGAGGGCATTGAGCTTTCGAGGTCGAATCCTACCCCGTGGTCGGAGGATGCGATGGGCGAAGCCTTAGAGGCTGTCAGGTTAGGACACATGTCAATAAATCAGGCTGCAATACACTATAACCTGCCATATTCTTCCCTGTACGGAAGGTTCAAGCGAGGAATAAAATACGAAACCGAAACCCTAGAATCCAACTCAGACAGCCAGTCGCACCTGGACGCGCAAGCCCACATGATGGACTACTCCAACTCCCATCAACAAATTCCGTATCAACAGCATCCGGCGAACAGCTGA
- Protein Sequence
- MSGQHYCLRWNNYQSNMTTVFHQLLQNEAFVDVTLACNDLSLKAHKVVLSACSSYFQKLLLENPCKHPTIIMPQDICYADLKFIIEFVYKGEIDVSQAELQSLLKTADQLKIKGLCESPEEKENSETAAFPFITRGFPKLRRVASPKQFKPLDNNRKLKYKKPERKRTTDNEDKDNNKDSVIVSNSSEDENEMPIALDEESRKRKLSESQNKPLNMSSHAGILTGQTFSFSQFGVDNEDFPPEPPAPTAIPVGNVDMEHSPTRSLLTNSSIHRTDLSDSHIKYSEIKKEPDIKFETLRSYDQESLLDMEGSHMSGPDHSMDSHDDPEHGMHTMMITPELMGMMSTVPSRLDSSCNDMSMKSNGHTDQHSTGRAHGGGPKTWTQEDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYETETLESNSDSQSHLDAQAHMMDYSNSHQQIPYQQHPANS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00980857;
- 90% Identity
- iTF_00465076;
- 80% Identity
- iTF_01258206;