Paka005591.1
Basic Information
- Insect
- Propsilocerus akamusi
- Gene Symbol
- -
- Assembly
- GCA_018397935.1
- Location
- CM031468.1:15713483-15715772[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.32 1.5e+03 -0.9 0.0 18 46 272 300 263 302 0.84 2 9 0.00018 0.89 9.4 0.0 21 46 303 328 299 331 0.91 3 9 0.00021 1 9.3 0.1 21 44 331 354 329 358 0.91 4 9 0.0048 23 4.9 0.1 21 45 359 383 355 391 0.90 5 9 0.0056 27 4.7 0.1 23 47 417 441 409 446 0.82 6 9 0.00012 0.61 10.0 0.1 21 47 443 469 439 475 0.85 7 9 0.0079 38 4.2 0.0 22 45 500 523 494 530 0.85 8 9 0.017 84 3.1 0.0 21 44 527 550 523 554 0.89 9 9 0.00025 1.2 9.0 0.0 21 45 555 579 550 585 0.91
Sequence Information
- Coding Sequence
- ATGATAGCCAATACAGCAAATGCTCAACAAAAACAACAAGTCGTTGGATTTCAGCTGCCTATACAACTTCTTCCAGTCTATGGCGGTCAAGTTATTTTCTCAGCACCTACGGAGCAGAAGATAAACAATGGAACAGCCGTAATTGGAGCAATCGATAAGAATAATCGTTGTCATCTATGCCAAAAAGATTTTTCATCTCTCGCCAGTCTTCAATCACATCTGAGACAGCATGTTGATGACAAAGGAACTGTGTATAGAAATATTATTGTGTCGTCCATCAACAATCCTGTTACTGCAACCATGATCTCGACACCGATGATTCAGCACTATCATATTGCTAACAATGCTTTAAAAATCGAAAAGGACTATCAGCCAGCTAAGAACCATCAAACTGTCATACACACATCAGATGTTATAAAACAAACTCATCCAGAATATACAACGGTAGCAAATCTTAGTGCAGCACATCCCGTTATTCAACACATTCAAATTCAGCAACGAGACAAGGAGAAATCAAACATGGTTCAGGTCGTCAAACAGAATCCTGTCGAATATCACATTCAACAACAAGAGCACGCAGCCATGGTGGTTGCATCAATGAATCAAAAGTCAGGTTTGACAAGTCCTTTTTTAAATAGCACAATCAAATACGAGCTTCATGGGCAACCCGTTCAGTTGGTGACAGAAGTTTATCCACAAATCGTTGCAGAAACGACAAAATCAGATGACATGAATTCAGATGCTTCATCGCCGACATCACCAAACATTGAACAAACAACAACGCCAACACCATCCGCATCGTCTTCAACAGGCGAAGCTCAAAATGAAAAGCAGCACAAGTGCTTGCTATGTGATAAATATTTCTCTTCTGTTGGAAATCTTAACATTCATCTTAAAATTCATTCAGGCGAAAAACCATACAAATGTAATGTATGTCACAAAGGATTTATACAATCCAATAATTTAGCTACCCATCTAAAAATCCACACTGGAGAGCGCCCACATGCATGTTCCATATGCGGCAAGCGATTTAGCCAATCAAACAATCTTAAAACGCATTTCCGCACGCATACTGGTGAACGTCCCTTTAAATGCACGCTTTGCGAAAAGTCCTTCAATCAAAAAAATAATTTGACTACCCATTTACGAACGCACAGTGATTATCATCCATCAAATTGCAGTATGTGCGGTCAATCATTTTCATCGTTTAATGAGTTGTTCTATCATATGCGCGATCATGCTGAAGTGAAGCCATTTGTTTGTACCATCTGTAATAAAGTGTTGAATTCTCAAAGTGAGCTTAACGAGCATCTTAAGCAGCATTCATCTCCAAAACCCTATAAATGTGATATCTGCCAAAAGCAATTTACTCAATCGAACAATCTTAAGACTCACATTAAGACACATATTTATCAAGATCCATTCAAATGTACAATGTGCACAAGATCATTTCAAGATGCTGATGAGTATCAGATGCATGTTCGAGTTCACACAACTGATAAGCCATATGAATGTACATTTTGTGGCAAAAAATTCATCCAGTCCAATAATTTAAAAACACATGTCCGTACTCACACTGGCGAAAAACCATTTCACTGCCAGGTTTGCGGTAAATCGTTTAATCAGAAAAATAACTTAAACACACATACTCGAGTCCATACTGGAGAAAAACCATTTGAATGCACGCTATGCGATCGTCGGTTTAATCAGAGCAATAATTTAAACAAGCATTTGAAGACGCACGGACAAGAAAAGGAAATCACCAAAGCGATGGAAACTGAAATGGAAAAGATGATGAATAACGTCATTCACTTGCAGCAGGATTAG
- Protein Sequence
- MIANTANAQQKQQVVGFQLPIQLLPVYGGQVIFSAPTEQKINNGTAVIGAIDKNNRCHLCQKDFSSLASLQSHLRQHVDDKGTVYRNIIVSSINNPVTATMISTPMIQHYHIANNALKIEKDYQPAKNHQTVIHTSDVIKQTHPEYTTVANLSAAHPVIQHIQIQQRDKEKSNMVQVVKQNPVEYHIQQQEHAAMVVASMNQKSGLTSPFLNSTIKYELHGQPVQLVTEVYPQIVAETTKSDDMNSDASSPTSPNIEQTTTPTPSASSSTGEAQNEKQHKCLLCDKYFSSVGNLNIHLKIHSGEKPYKCNVCHKGFIQSNNLATHLKIHTGERPHACSICGKRFSQSNNLKTHFRTHTGERPFKCTLCEKSFNQKNNLTTHLRTHSDYHPSNCSMCGQSFSSFNELFYHMRDHAEVKPFVCTICNKVLNSQSELNEHLKQHSSPKPYKCDICQKQFTQSNNLKTHIKTHIYQDPFKCTMCTRSFQDADEYQMHVRVHTTDKPYECTFCGKKFIQSNNLKTHVRTHTGEKPFHCQVCGKSFNQKNNLNTHTRVHTGEKPFECTLCDRRFNQSNNLNKHLKTHGQEKEITKAMETEMEKMMNNVIHLQQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01257313;
- 90% Identity
- iTF_01257313;
- 80% Identity
- iTF_01257313;