Paka001479.1
Basic Information
- Insect
- Propsilocerus akamusi
- Gene Symbol
- lrrfip2
- Assembly
- GCA_018397935.1
- Location
- CM031470.1:6938974-6941498[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.071 1e+03 -1.6 0.2 174 214 64 104 17 112 0.65 2 3 2.4e-110 3.5e-106 354.6 36.2 1 299 194 479 194 480 0.97 3 3 0.089 1.3e+03 -1.9 3.7 216 245 505 533 484 554 0.50
Sequence Information
- Coding Sequence
- ATGGACGGATTTCAATTAAGCTGCGATTACAATCCATTACGGATTATTGAGGATGAAATGCCGTTGACAAATAAATTCTCTGATAACAGCAGCAATGACGATGATAACAAATCGAATGTCAGTGAATTATTTGATTTCAGTGCTAGTGATACTGAAGAGTTAGACGGCGATGGTGAAGTTGTTCAACAGTTGCTAGTAAAACAAAATAGTTTAATAATTATCGAAGACAAGGATCTGACAATGGAAAACACTGAAGACTTTAACAATAATGATAGTAACAATGTCCATCGCCTGTCATTGCAAGTGGAAAGTGGCGATGATGGCAGTTTGGTCATGACGAATGAAGCCATCAATCGAACAATTATTAGAATTGGTTCGAATGGTTCCAATGGAAGTGAATTTGGCGAAGTGGATGGAATGAAGATGGAACAAGCGAATGAAGCGATCAATCATGAATTTCGTGATGTTGCTGACAGTGATAATAATGATGACAGCGACCGTCGAAATAGTCATCACACCGCAAGCCATTCAAGCGACGGTGAAGTCATCGTGAATATTCTGGGTCAAATAAACGATATAGCCGAAGCTCGATTAGCAGCGAAACGACAAGCACGAGCTGAGGCGCGTGAAATTCGTATGCGCGAACTGGATCGACAACAGAAAGAACTGGAACAAAATGCTGATCGAGTCTATGATATGCAACAATCTGAAAGCCATACGACACCACGATCCCGACTAACAGTCACCAGTTCAGTGGCAATTAGAGGAAGCTCAATGTCGTCGAGACGAAGTAGTGAAGATTCATTGGAAGAAGAAGGTAGAAGCTTAAGGGATCTTAGGCATGAATTAAAAGACGTAGAAGAGCGCTTCCGCAAAGCCATGATAACTAATGCCCAGCTCGATAATGAACGTTCATCGCAAGCATATCAAATAGATTTACTAAAAGATAAATTAGAGGAAATGGAGGAATCTTTTGCACAATTGCAACGAGAGCATCGGGAAAAAACGCGAGCGCATGATGCATTAAAACGTCACAATGATAAACTCACAGAAGAACTGAAACTGGTTCAAGGACAACTCAATGAGCGCGACACATTAATCGCTGATTATGGTTTAGTTATTATTTTAGTGGAAAATGAGGATGGCACCGATGCCAAACGCGTTCTAGTCTCCGATGAAAATGCCCAGCTTTTGGGCAGTGTAGAAGGATCGATAGATGTTCGACTCAAAAAGTTTGCCGAAGATAAGCAAGAACTTCAGACAGAGGTGCAAAAGTTACAACAACAAATTAATGATATTAAGACGAGAGGTGGTCGCCGTTCGAGCTCCATTAATGGTATTGTAGATGATGACGATTATGAGGATGCTCAACGTGAGGCTAATAAAGCTATAAACGACTATAAATATCGTTTGCAGAAGGCTGAGCAAGAAATAGCAAGCCTACAAGCTAGCTTAGCTCGTTCCGAGACTCAGGTTATTCGTTATAAAAGTACAGCGGAAGCGGCTGAAAAAGCAGAGGCTGATTTGAAGATCGAGAGAAGAAAACTTCAACGGGAGAATCGTGAAACATTAGAACGTCTAGAGGAGCTTGAAACATCTAATAATCATCTACTGAAACGATTGGACAAGTTAAAAAATGCCAAAAGTGCTCTGCTCAAAGATCTTTGA
- Protein Sequence
- MDGFQLSCDYNPLRIIEDEMPLTNKFSDNSSNDDDNKSNVSELFDFSASDTEELDGDGEVVQQLLVKQNSLIIIEDKDLTMENTEDFNNNDSNNVHRLSLQVESGDDGSLVMTNEAINRTIIRIGSNGSNGSEFGEVDGMKMEQANEAINHEFRDVADSDNNDDSDRRNSHHTASHSSDGEVIVNILGQINDIAEARLAAKRQARAEAREIRMRELDRQQKELEQNADRVYDMQQSESHTTPRSRLTVTSSVAIRGSSMSSRRSSEDSLEEEGRSLRDLRHELKDVEERFRKAMITNAQLDNERSSQAYQIDLLKDKLEEMEESFAQLQREHREKTRAHDALKRHNDKLTEELKLVQGQLNERDTLIADYGLVIILVENEDGTDAKRVLVSDENAQLLGSVEGSIDVRLKKFAEDKQELQTEVQKLQQQINDIKTRGGRRSSSINGIVDDDDYEDAQREANKAINDYKYRLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEADLKIERRKLQRENRETLERLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -