Paka012555.1
Basic Information
- Insect
- Propsilocerus akamusi
- Gene Symbol
- rfx7.L_1
- Assembly
- GCA_018397935.1
- Location
- CM031471.1:1331624-1337309[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.8e-33 2.8e-29 101.3 0.0 3 77 198 272 196 274 0.97 2 2 0.49 3.6e+03 -1.6 0.0 26 41 947 962 942 965 0.83
Sequence Information
- Coding Sequence
- ATGACACAAAATCCTTTCCAGCCGTGGAAACAAAACTTTAATTTGCCCAATCAGTTTTTTCGGAAAAATGACAGTGAATCGACATTTAGCAAAATGAAAAACGGCGATGGTGATATCTCACCAGCATCAAATCCAAATCTCAGCATGATGTCACACCCTTTTGAGCTCAATAGTGATTCGCAATCGTATCAGTCACCTGTCACATCCACAAATGCACATCCACCATCAATGGACACTGAACAGCAGCAGCAGTCAATTAGTAAAGCGACACCGAATGGTACAAAGTTTTCCATTTTTTCACAATTAAGTAATTTAAATAAAATCAGCGCATTTGATAATTTGCTATTAAATGCATCAATGAGCATAGAGGATGAGGATCTGAATGGTGACAAGCGACAGGGCATGAGAAAATTGATGGAACAAGCTATAAGCGACGAAGCCAAACAGCAAATTGCATTTATTTTGGAAAAAATTTCGAGTCTTCGACCAGCTGAGAAACTACTCCTGTACTTGAAAATGCCCGGTGGACATTCAGAAGTTGACCCCCTCAAACAATCCCAAAATCCACTCGGTTCACGCTCAGAAATTTCACACACCATCAATTGGGTCCGATCACATCTGGAGCACGATGAAAAGGTTTCCATACCGAAGCAAGAGGTTTACGAAGATTATGTGACGTTTTGTGGAAAAATAAACATCAAGCCATTATCGACGGCAGATTTTGGAAAGGTTATGAAGCAGGTCTTTCCGGACATACGACCCAGACGATTAGGCACCCGAGGTCACTCGCGATACTGTTATGCGGCCATGCGTAAAGCAACAAAACTCCAGCCGCCTCACCTTCCAGATCTCTCTAGTGAAACAACACATTCAGATGCTGATAAGGAGGAGGTCGCCTGGAAAGTGATAAAGTCATGGTCAGAAAGTCTACTGAATTCTCAATTCGATACATTTGATGAGCTTGCTGCGCACATTTCGCAAAACAATTTAAATTCACTGTCCAGTTCTACCTCAAAGCAAATGTTGCAAAAGAAGCTGATGCAACGTGAAATGAAAGATAGGAAAAGATTAAATAATCAGACTTTGAAGAAACGTCGTAAAAAGCGCAGAAAGTCAACGTCATCGTCACCAGAGCCTCAACAAATGAATGAGGATCTGTATCACGATCGCATTCGAGTCAAAAGAGAAAAGGAGACAGATGGAAGTGCAATTGAAAACAATGATGAGCAATCTGAAAACTCATCTGATGTTCCCATGAATTTAACTAGCTCGGAGCAATCTCGTCGCATACAACACGAACTCGCCTTAAGTACAAATCAGCTTGGTGTTAACGGACAATATGATGGACATGATATTTCTGTTAAAAGCAAGCTCAAAAATAAATTGAATGCAACTTTTGCAGAAAATAATGCATCAATAAGAGCTTCAACATCGACAGATGTGCATCTAGATGACAACAATAGTCAATATATAACGTGCAAAAAAGTCAGACAAGCTCAGCAACTTAAAATGACAGCAAATTCTAATTCAATTGCCGTCACAAATCAGTTTACAAACTGTGATGTCACACAAAGTTGTCCTCCAAACGATTTACAAATTGAAACACAAACCGAAATGGCGATGCCATCTAAGATTCCCGCAAAAAGGCGACAAAAGAAAGAGTTGCCAGCAAGTCAGAAACGTACAAGATATCCTGACAAATCAGAACTGCCCGAGCCGCCATCGATATCGCCATTCAATCAAGTTGAACCCAGTGATCTTGTGGTAAAGAAAGACGACTTAAAGGATGATTTTATATTGCCACGAGAACGATTTATAAGCATTTGTAATATGGATCGTAATGCACTTGATACGTATCTCAATTTAAATGAAGACAGCTCACAAGATCCTGAACTCATGCAGTATTTTGGCGACGACAGAAACAGAAATAAGAGTTCAGAATGTGTCGAAGAAGATTTGGGACCCATGAGCACGTCAGTGCCACTGCTGGAAAATTATCAACTGATGGCTGAAGGGAAAAATGAAAAAGTTAATGATAAAAACTGTGATAAAATATCACAGTTGCGATCGATGTTGGAAGAAAAATATAATGTTGCAACAGGGGGAAATTACAGTAATGAATCTGTTATAAAGAACCTGCTGCTAAAGAATCAAACCACTTGTCAGGTGACAACACAGGGCTCTTGCGAACAATCTGCTTCGTATGTAACGCCAACAAATTCACACCCAATGATGTCGCAGCGACATGTCATTCACTACCAGAATCAAAATCAATCGCAGCAGCAGCAAAATCACCAGCAAAATCAATCTCAAAGTAGTCGTAACTACCAGCTTGAAGCAGCAATGACACCGGCAAATGACAAGTCAATTCCACAGTCACCAAATACGCGCCGCAAAAATTTTAGCTTCGTTCCCATTCCATCGCAATCGACGAGAGTTAAGAATATTAATCTGAATCCATTATTCAAAGGTGATAATGGAACGAGTCCATTTGTAAGTCCACGTGCGACACCTCTGAACACTAAAAAGCCACTACATCCATTACTGAGCATTCGCTGTCCGAATGTCGCTATCGATAAGTCTGTTCCAGTTTTGGGCGCAAATAATACAGCTTTCTGTCGTCCGCATCAATTCAAAATGGAACCAGCATCTGCGCCACCAAGTCCATCAATGATTCAAAGCTACAACTTTAGTCCACAAGCTCAGCAGAATCAATTTCAATTTCAACCCTTGACCAATATCAACAGTCAAAATCAAGGTACAAATCTCAACTATCCCGTAGAAACGCGTTCTCAAAGTGTGCCACCTCATTGTACAAATACAAATCCGTATAATAGCTATACTAATTATTCGTCAGCATGCAGCTCAGTGGCTCCAACACCTGTGCCTTCTGATTATCAGGAATTTTCTGACACAAACATTCTAGACATTTTCAATAACGAACAAGTGCCACCATCATCAATAAAAATGGAAGCAAATGATGGTGACGGTATTACGGAATTGCTCGATAATGAAATACTTAATCAAAACTCTGATACATCTGAAACAGATTTGATGTCGGGTGGTAATGTCAGTAATAGCGATGCCACTATGCGTTTAAATTTTGCGTCCATTTCGCGCTCAGTACCAAACACTCCATTGCCATATCACACAAATTACTGCAACAACGGCATGAATATTTACAACACAATGGGAAAGTCAGTGCCAACGACGCCCAATGCCAATCCCAATGTTATAAATCCCTTCCGTTATAGTCCCGAATTGCAACGTACTCGCGATTTTCTCATTAATGGTTTTAATAACAGCATCAATAACAACAACAACAATGTTATTAACAACAACACAGATAAGTTGATTAAAAATTCCGATGCGGTTTCAAATGAGCTGGATGAATTGTCCAATTTGGATTCGAGTCTATTGAATAGTTTGTAA
- Protein Sequence
- MTQNPFQPWKQNFNLPNQFFRKNDSESTFSKMKNGDGDISPASNPNLSMMSHPFELNSDSQSYQSPVTSTNAHPPSMDTEQQQQSISKATPNGTKFSIFSQLSNLNKISAFDNLLLNASMSIEDEDLNGDKRQGMRKLMEQAISDEAKQQIAFILEKISSLRPAEKLLLYLKMPGGHSEVDPLKQSQNPLGSRSEISHTINWVRSHLEHDEKVSIPKQEVYEDYVTFCGKINIKPLSTADFGKVMKQVFPDIRPRRLGTRGHSRYCYAAMRKATKLQPPHLPDLSSETTHSDADKEEVAWKVIKSWSESLLNSQFDTFDELAAHISQNNLNSLSSSTSKQMLQKKLMQREMKDRKRLNNQTLKKRRKKRRKSTSSSPEPQQMNEDLYHDRIRVKREKETDGSAIENNDEQSENSSDVPMNLTSSEQSRRIQHELALSTNQLGVNGQYDGHDISVKSKLKNKLNATFAENNASIRASTSTDVHLDDNNSQYITCKKVRQAQQLKMTANSNSIAVTNQFTNCDVTQSCPPNDLQIETQTEMAMPSKIPAKRRQKKELPASQKRTRYPDKSELPEPPSISPFNQVEPSDLVVKKDDLKDDFILPRERFISICNMDRNALDTYLNLNEDSSQDPELMQYFGDDRNRNKSSECVEEDLGPMSTSVPLLENYQLMAEGKNEKVNDKNCDKISQLRSMLEEKYNVATGGNYSNESVIKNLLLKNQTTCQVTTQGSCEQSASYVTPTNSHPMMSQRHVIHYQNQNQSQQQQNHQQNQSQSSRNYQLEAAMTPANDKSIPQSPNTRRKNFSFVPIPSQSTRVKNINLNPLFKGDNGTSPFVSPRATPLNTKKPLHPLLSIRCPNVAIDKSVPVLGANNTAFCRPHQFKMEPASAPPSPSMIQSYNFSPQAQQNQFQFQPLTNINSQNQGTNLNYPVETRSQSVPPHCTNTNPYNSYTNYSSACSSVAPTPVPSDYQEFSDTNILDIFNNEQVPPSSIKMEANDGDGITELLDNEILNQNSDTSETDLMSGGNVSNSDATMRLNFASISRSVPNTPLPYHTNYCNNGMNIYNTMGKSVPTTPNANPNVINPFRYSPELQRTRDFLINGFNNSINNNNNNVINNNTDKLIKNSDAVSNELDELSNLDSSLLNSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -