Pcoq023960.1
Basic Information
- Insect
- Proctacanthus coquilletti
- Gene Symbol
- topi
- Assembly
- GCA_001932985.1
- Location
- MNCL01000169.1:256680-259577[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.087 11 7.3 0.5 2 20 148 165 147 167 0.90 2 11 1.2e-05 0.0015 19.4 2.3 1 23 227 249 227 249 0.97 3 11 3.2 4e+02 2.3 0.2 2 23 272 294 271 294 0.82 4 11 0.053 6.6 8.0 0.3 2 23 349 370 348 370 0.96 5 11 5.4 6.7e+02 1.6 0.0 1 20 376 395 376 397 0.89 6 11 0.076 9.5 7.5 1.3 2 22 417 437 416 440 0.89 7 11 5.9e-07 7.4e-05 23.5 1.9 1 23 492 514 492 514 0.95 8 11 0.00065 0.081 14.0 1.0 1 23 520 545 520 545 0.95 9 11 0.29 36 5.6 1.7 1 23 551 573 551 573 0.88 10 11 3.5e-07 4.4e-05 24.2 0.3 3 23 581 601 579 601 0.98 11 11 0.0014 0.18 12.9 1.1 3 23 609 630 607 630 0.95
Sequence Information
- Coding Sequence
- ATGGACTACAACGACGAAGAATACAATTCAGATATTCTGCTTGcggaaaaaatattctcacAACTTAAAGATTATAATCCAGGTAATCCAGAAGAAGAGACACAAATTGCTAGTAACGAAAGCCCAAAGGAAGTTCTGTCTGAAGAGACGGCAGTGGTTCCTGTGCCCGCATCAAACCTTGCCGTGGACGACCAGTGCGCAATTCCAAACCAGCAGAACACTGAGGAGCCGATTGACCTGACTAATCAACAAAATGTAACACAAGTTGAAATGAGTGAGCTTCCGGAATTTAGCAGGGAATCCAAGGATACAGTCGTGGTTATAGATGATGAACATACGCAACGTTATTTGGATATGCTTATCGCTTCACTGCCTCCAGAGTGCTACTCCGATGATGTTATTGTTGTGAAAGAGTCTATCAAGCCAAAGAAATACGCCATAAAATGTACGAACTGTGATCAAGTTTTCAACGAAGACGCCTTCAATGAGCACGTTTGTGACTATGATGAGAATAAGACCTTAATAAAAGACGAAGAGCCGGTAAAATGTTCTACAGTTGAACTTGAAGAGCCACCATGTCTTCGCCAACTGCGAGAAAACAACACACGAATTAGGAAGTTCCTGAAGGATGAACTCAAAATAGACATAGGAGGTCCAACTAAGAAAAATGATGGTCCTCACGAGTGCAACATGTGCGAGAGAAAGTTCGTACATGCCTCCGGTCTGGTCAGGCACATGGAGAAGCATGCTATGGATTTAATACCGATTACAACGAACACTTCCCAGAGCGGAAGTGGGTTGAGGGTGGTGATCAAATGCTTGATATGCGGCAGGATACTTTTCGGCCATATAGAGGCAATGaagcatttaaatgaaaaccacGCCTATATGGAGATCGATGAGGAAGTGGATGATGAAGGCGACAAAGATATGCCGAGTGAAAAACTCGAGGAAGCCATTGACTTTATCATGAAGGAGgTAAGCATTGAACAAGACAAAGTAACAAATCCATACATGAAGGTCGTAATTTTAAGCTGCACGCTGCAATGTGAATTTTGTGACTTCCTCTTCTCGGAGGTTTCGGATCTTTTGCTCCATTCATCAACGCATGACCCAATGCGTGGCTTTGAATGCTCCTCCTGCAGTATAAATGTTTCAACggctaaagaaattttcctaCACTGGCAAGCAGAGTGCCCTTATACAAGGGATGAACTAAAGAAGACAagcaatttacaaaagtatCTAGTGTGCAATGTTTGCGAGAATAAGTATACTTCGCATGAACAGTTATATGACCACAGGTATACCGAGTTCCATTTGTTTCCAAGGATGAACAGGAGCTTGGGAATAATGCAGGTCTGCTGCGAGTACTGTGGAACTTTTCACGATAGCGCTAAGGCGATTATGCGACATCATGAGGAGAAGCATatgaaaaagattaaaaaggaGACGACCACAAAATATCGACAATATCTCTGTGATGTTTGCGGGAAGTCGTATACTCAGTCGAGTCATTTGTGGCAGCATTTGCGCTTTCATAGGGGTGTTAAACCATTCGCTTGTAAAGAACCAGGCTGCAACCGTCGTTTCACAATCCGTCCAGACCTCAATGACCACATCCGGAAGTGCCATACAGGAGAACGTCCCTATCATTGTCTTGTATGTGGGAAACGCTTCCTCACAGGTTCTGTTTTCTATCAGCATCGTTTGATTCACCGCGGGGAGCGGCGATATGGCTGCGATGAGTGCGGGAAACGATTCTATCGAGCTGacgctttaaaaaatcaccaGAGAATTCATACTGGTGAAAAGCCGTACGGATGTATGTACTGTACCAAGAGTTTCAGACAGCGCGGGGACCGGGACAAACACATCCGAGCACGTCACGCCAATCTAGATGCAAACGCAAGGTCGTTCAACATGAAAAACAAAGACAATCCGCATAATGGCGTAGTGTTTGTTGGCAACGTCGCATTTCCTACTAGTATGTTTAAGCCCATGGTGAGAGATATTGACGAAGGCCAGAACATGTATTag
- Protein Sequence
- MDYNDEEYNSDILLAEKIFSQLKDYNPGNPEEETQIASNESPKEVLSEETAVVPVPASNLAVDDQCAIPNQQNTEEPIDLTNQQNVTQVEMSELPEFSRESKDTVVVIDDEHTQRYLDMLIASLPPECYSDDVIVVKESIKPKKYAIKCTNCDQVFNEDAFNEHVCDYDENKTLIKDEEPVKCSTVELEEPPCLRQLRENNTRIRKFLKDELKIDIGGPTKKNDGPHECNMCERKFVHASGLVRHMEKHAMDLIPITTNTSQSGSGLRVVIKCLICGRILFGHIEAMKHLNENHAYMEIDEEVDDEGDKDMPSEKLEEAIDFIMKEVSIEQDKVTNPYMKVVILSCTLQCEFCDFLFSEVSDLLLHSSTHDPMRGFECSSCSINVSTAKEIFLHWQAECPYTRDELKKTSNLQKYLVCNVCENKYTSHEQLYDHRYTEFHLFPRMNRSLGIMQVCCEYCGTFHDSAKAIMRHHEEKHMKKIKKETTTKYRQYLCDVCGKSYTQSSHLWQHLRFHRGVKPFACKEPGCNRRFTIRPDLNDHIRKCHTGERPYHCLVCGKRFLTGSVFYQHRLIHRGERRYGCDECGKRFYRADALKNHQRIHTGEKPYGCMYCTKSFRQRGDRDKHIRARHANLDANARSFNMKNKDNPHNGVVFVGNVAFPTSMFKPMVRDIDEGQNMY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00718060;
- 90% Identity
- -
- 80% Identity
- -