Pcoq007188.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Proctacanthus coquilletti
Gene Symbol
PAXBP1
Assembly
GCA_001932985.1
Location
MNCL01000015.1:904518-910937[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3.4e-34 4.5e-30 105.7 0.2 1 272 602 813 602 815 0.95

Sequence Information

Coding Sequence
ATGTCACTATTTCGTAAACCTAAAAAAACTATGCAAAGGCGTGTGTTTAGCGCTGTAGATGAAGACGATGTCGCCGCTAGCAATGAAGATGTTGAAAAAATGGATGTCGATGAGCAATCTTCGAACAATTCAGGAAACATTGGAtctaaaaaagacaaaaagagagataaaaagccaaaaaatgATGAAGCAAAGTCTAAGAAGGCTTTACTAAGTTTTGCCGACGATGaGGAAGAAGGTGAAGTGTTTCAAGTTAAGAAGTCGTCCCATAGTAAGAAAGTTATGAGAATGCTGGACAGAGAAagacgaaaaaagaaatctaaagaAAGCAAAGATGATAGATATGAaagcaaatatgaaaataaatatgaaaaatatgagcGTCATAAAAGTGAGCAATCTTTATCTCCGCCGCCGCCAATGAGGCATACCTTCGAAGGCCAAGAATGTAATACCCAAAATTCTCAAAGTAACAATAACGTCAATAACTCAGATAGTATCCAAACAGAAATACGCACAGACGACTTTGTGcttgttgttaaaaaatcgGAACCGGATAATGTTATTCTCAATGGAAGGGCTGCTTTATGCGCAGGCCGAGACGATATGTCTTCAGAAGACGAAGATTCTGATTTCAAACCGATTCATAGATTCAATAaaccagaaaattttaaactggtCCTCGAAAGTGGTACAATTCCTGATGCAGCAATGATCCATGCTGCTAGAAAGAGGCGGCAAAAGGCAAGAGAACAagGTGATTTTGTTTCTCTGgaagaacaaaacaaagaaatatccAAAAAAGGTAACAGGCTAGTTCGTGAAGATGGAGAAGATGATGCTTCCGATGAGGAAGAACGCGTGGATATGAACGCAATAACAGGAGCTAAAGAAAGAGAGGAGCGACGTGAGAAATTCTATGCGGTTGAAAATGAATACTCGGGGGATGAATCTGAACAGGAAATGAATGAGTGGGAAAATCAACAGATACGAAAAGGCGTAACTGGGGCTCAATTAGTAACAGCCCAACAGGAATCAGTTTTATCTAGGTTTATTATAAAGCCAACAAGTCATGCTATTGAAGAAGATGTGCCACAATCGACTGGTACTTTGCTCGAACAGGCTTATGCAAAAATTTGTCTAGAGAAACCACGACAGGTATTATTATCTACACAAAAATCTGAATCGAAGCCGTCAGGGCCTAGAGCACCACAAGAAATCActgatgttattaaaaaaaggttGATGCAGTTGAAAGTGCTGAATAATAAACACACTGATGATATTGAAAGAATCGAGAAGGATTTACAAGCTATTACTTTAGAGGCAATAGACTGTACACAGAAGGCACCAATGGCTGCAACAAAATATAGATTCTATCAAGAGTTACGTGGGTATGTCACAGACTTGGTTGAATGTCTTGATGAAAAGGCGCCGCTGATAACTGATCTGGAAAAACGTACTTTAAGTGTGCTCTCAAaacatgcaaattttcttattgagCGAAGACGACAAGATGTAAGAGATCAAGCAAAAGAAATGGCAGATGTTGCAAAACCGAGTGGCTCAAAACGGGGACCAGAACAGGAAGCATTGAAGCGCCGGGCAGCTGAACGAGAAGGAAGAAGGACAAGGCGGCGTTGCGAAAGAGAAAAGAGTGACTATCTAATGGCCCATTTGGATGGAATGTCGAGTGACGACGAAATGCCGGATCAAGATATAGCACAGTACAAAACGAGTTTAGATGAGCTGGAAGTAGAAGCGGACGACTTGTTCGAAGACACTTGTGACGATTTCTGTAAGCTAGATTTAATACTgtcgaaatttgaaatttggcgGAAAACTGACATGGACTCTTATAAGGAAGCATTTGTTAATCTTTGCCTGCCTAAGattGTTGGTCCTATAGTTCGAGTTCAGCTGATGGTTTGGAATCCATTAgatgaaaattacaaagatatagaaaaaatggaCTGGTATTCCGTTTGCATGCAATATGCCTACTCAAATGATGAAACAGAAGAGACCCTTACTGCCGATCCAGACCTCAGATTAGTTCCAAcgattgttgaaaaaattattttgcctaAATTAACAGaGATTATTGAAAACTGTTGGGATCCTCTATCGACAACGCAAACTCTGAGGTTAATCGGCTTAATACGACGGTTAGGAAGAGATTATCCCTCCTTGAGAGAATCATCAAAGTCTCTTCAAGTATTGTTTAATGCGATCCTAGATAAGATGAAGGCGTCTCTGGATAACGACGTTTTCATACCAGTTTTCCCAAAACAGGTTCAAGAAGCAAAATCTTCCTTCTTCCAGCGACAATTTTGCAGCGGCttgaaattattcagaaaCATTCTTAGTTGGCAGGGTATCATTGCGGATAGACCCTTAAGAAATTTAGCAATATCTTCCCTATTAAACAGATATTTACTATCTGCTATGAGAGTGTGTGCAGTAATCGATGCTGTTTCGAAAGCTTACATAATTGTGAATACCCTACCGACAGTTTGGTTGCAGTCAGAGCTTGAATGTGTTGAAAGTTTTAAtcatttcataatatttatgaaacatATTTTGGACCAGTTAGATAAAAGAAATCCCAGTCACATGCATTATTATGATAAAACTAAGCAGATACTGCAAAGGCTTCACAGCTATTACTAA
Protein Sequence
MSLFRKPKKTMQRRVFSAVDEDDVAASNEDVEKMDVDEQSSNNSGNIGSKKDKKRDKKPKNDEAKSKKALLSFADDEEEGEVFQVKKSSHSKKVMRMLDRERRKKKSKESKDDRYESKYENKYEKYERHKSEQSLSPPPPMRHTFEGQECNTQNSQSNNNVNNSDSIQTEIRTDDFVLVVKKSEPDNVILNGRAALCAGRDDMSSEDEDSDFKPIHRFNKPENFKLVLESGTIPDAAMIHAARKRRQKAREQGDFVSLEEQNKEISKKGNRLVREDGEDDASDEEERVDMNAITGAKEREERREKFYAVENEYSGDESEQEMNEWENQQIRKGVTGAQLVTAQQESVLSRFIIKPTSHAIEEDVPQSTGTLLEQAYAKICLEKPRQVLLSTQKSESKPSGPRAPQEITDVIKKRLMQLKVLNNKHTDDIERIEKDLQAITLEAIDCTQKAPMAATKYRFYQELRGYVTDLVECLDEKAPLITDLEKRTLSVLSKHANFLIERRRQDVRDQAKEMADVAKPSGSKRGPEQEALKRRAAEREGRRTRRRCEREKSDYLMAHLDGMSSDDEMPDQDIAQYKTSLDELEVEADDLFEDTCDDFCKLDLILSKFEIWRKTDMDSYKEAFVNLCLPKIVGPIVRVQLMVWNPLDENYKDIEKMDWYSVCMQYAYSNDETEETLTADPDLRLVPTIVEKIILPKLTEIIENCWDPLSTTQTLRLIGLIRRLGRDYPSLRESSKSLQVLFNAILDKMKASLDNDVFIPVFPKQVQEAKSSFFQRQFCSGLKLFRNILSWQGIIADRPLRNLAISSLLNRYLLSAMRVCAVIDAVSKAYIIVNTLPTVWLQSELECVESFNHFIIFMKHILDQLDKRNPSHMHYYDKTKQILQRLHSYY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00937299; iTF_01049668; iTF_00717803; iTF_00628365; iTF_01461169; iTF_01183838; iTF_00424653; iTF_00454809; iTF_00453494;
90% Identity
iTF_01049668; iTF_00628365; iTF_01461169; iTF_00717803; iTF_00937299; iTF_01183838;
80% Identity
-