Pcoq001669.1
Basic Information
- Insect
- Proctacanthus coquilletti
- Gene Symbol
- bab1
- Assembly
- GCA_001932985.1
- Location
- MNCL01000231.1:74341-76361[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.1e-13 9.5e-10 38.6 0.0 4 45 364 405 361 405 0.92 2 2 0.016 72 3.8 1.1 4 20 497 512 496 512 0.93
Sequence Information
- Coding Sequence
- atggctAGTAATGAAGGCCAGACTTATTGTTTACGATGGAACAAtcacaaatcaaatttggtCGAAATTCTGGACGCCCTGATCAAAATGGAAAGTTATGTAGATTGTACCATCGTAGTGGATGACCAAGTGCAATTTAAAGCACATAGAGTAGTTCTTGCAGCGAACTCTCCGTACTTTCAATCTATCCTGCAGGATGTTCCTATGGATCATTGTAGTATATTGTTCCCTGGGGTACAGGCATTCGAGATGCGTGCTTTGTTGGAGTATATGTACACAGGAGAAGTTAACGTTACTCAAAGTCAAATTcctaaaattatgaaaattgccGAACAATTGGAAGTAAAAGGGCTCTTCGATATGACtgatcttaaagaaaaatttaataaatttgaagaaaccCCGGCGCATTATCACCCACAAATAACTCCAACGGCACCTTCGTTTGTAAGCAACAAAGAAGGAGAGCAGCAGTCATCGCCAGTGATTACAACATCAACCAACGTTACGTCAGCACAAAGCAGTAGTGCATCCCCaccttattcttataaatCACCATATTCCAGTCTTTATTCAAAAAGTCCCGGGCCTTCGACTTCAGAGCATCATTCACAGTGGCCTCCCATATCACCTCACTTGCCTACAACACTTCCTAGTGCAGCAGCTGCTGCCATGCTAAGTTCTGTCTATGAAGGCGCCAGTGATATGAATCccctaaaaaggaaaaaattatcgtCCATTTCAAGTATGCTACAGTACCCGTCTCCAAAAGATACGCCGATATTGAGAAATGTATTAGCGCAGTCGCATGCAGCTGATTCATCTCAGCCGATGCCCTTGATTGTTCAACCTATCAAACTGGAAAGAAGTGAAAAATCTGGTGTAAACAACGGCTGTAACGGATCTGAGTACTCATCGGATAAGAAGTCAAAATATGAGGAGCCTCATTCTCCATACACCGATAAGTCTTTCGAAGATGATGGTCTCGAATGTCCGCCGACATATTTAGGTGACTCTCGTTTGCCGCATTATTCCTCTCAGCAACAGCAAAAGCCAGAATGGAAGCGCTATAAGCAATATACTAGAAGCGATATTTTATCCGCTATTGAATGTGTAAGAAACGGTATGAGTGCTCTCCAAGCCTCGAGAAAATATGGCGTACCGTCAAGGACTCTTTACGATAAAGTAAAGAAGTTGGGCATAACAACGGGTCGACCCATGAATAGAACTATAAAAAGGAGCCCGAGTAGTGGTGGTGGATCTTCTGGTTTTCAGTTCAGTATGACTAGCAGTGGTCACCCTTATGGTCCAGGTGAATCTATGATCTCCCAAATGCATGAATCTTTGGATAGAGACAAAGATAGAGAACATCACATTCCGCCAACGATACCTCACCCAGCTGCGGCGCTGCTTGATCCAAATTTCCTTCAGCAGGCTTTCGAAGCTCGTGGTGGTGATATTGCTGGTAGAGAAGCTTTACATGCGATGGCACTTGCAGCTGCTGCGCATGCTGCTGTAAATGGTATGTCTACAAGTCCTGGTACCAATGGAACTGCGAGATCGCCGAGTCCGGGCCTTAGCAAATACCAGAAACCACAGAGTCCGCATCCTAATTATGATAAAGAACGCGAACGTGAAGGAGAACAAGACCGAGAGTGTGACCGAAAACGTGAGAGAGATCGGGATGAAAGTACCGAAGGTGAAAGAGAGCACGTAGAAGACGATGAGGACAAGGTTGAGGATTTATCAATATCACGGAAGGACGTCAGTCCATCTCCCTTACCACCTCCACAATCCTATCTTCAAAGGTCGCAATCAATGCTCCCTCAGCATTCGCCACCTCCCCAACATCAGCACACAGGAGGCGTTATTGTGCCACCGATgacaaaaatttctacaagtACGGAAGACTATACAACTGTGGAATGTAAACGAGAGTTGATCACAGATGACTcaagagaataa
- Protein Sequence
- MASNEGQTYCLRWNNHKSNLVEILDALIKMESYVDCTIVVDDQVQFKAHRVVLAANSPYFQSILQDVPMDHCSILFPGVQAFEMRALLEYMYTGEVNVTQSQIPKIMKIAEQLEVKGLFDMTDLKEKFNKFEETPAHYHPQITPTAPSFVSNKEGEQQSSPVITTSTNVTSAQSSSASPPYSYKSPYSSLYSKSPGPSTSEHHSQWPPISPHLPTTLPSAAAAAMLSSVYEGASDMNPLKRKKLSSISSMLQYPSPKDTPILRNVLAQSHAADSSQPMPLIVQPIKLERSEKSGVNNGCNGSEYSSDKKSKYEEPHSPYTDKSFEDDGLECPPTYLGDSRLPHYSSQQQQKPEWKRYKQYTRSDILSAIECVRNGMSALQASRKYGVPSRTLYDKVKKLGITTGRPMNRTIKRSPSSGGGSSGFQFSMTSSGHPYGPGESMISQMHESLDRDKDREHHIPPTIPHPAAALLDPNFLQQAFEARGGDIAGREALHAMALAAAAHAAVNGMSTSPGTNGTARSPSPGLSKYQKPQSPHPNYDKEREREGEQDRECDRKRERDRDESTEGEREHVEDDEDKVEDLSISRKDVSPSPLPPPQSYLQRSQSMLPQHSPPPQHQHTGGVIVPPMTKISTSTEDYTTVECKRELITDDSRE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00717661;
- 90% Identity
- iTF_01256497;
- 80% Identity
- iTF_01256497;