Pper021204.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Priocnemis perturbator
Gene Symbol
SCAND3
Assembly
GCA_963942575.1
Location
OZ012656.1:9936155-9938689[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.00035 0.035 15.0 4.0 2 23 286 307 285 307 0.97
2 15 1.4e-05 0.0014 19.4 2.2 1 23 313 336 313 336 0.97
3 15 8.7e-06 0.00086 20.1 1.8 2 23 427 448 426 448 0.97
4 15 6.1e-06 0.00061 20.6 1.8 1 23 454 476 454 476 0.98
5 15 0.00083 0.082 13.8 0.3 1 23 482 504 482 504 0.97
6 15 1e-06 0.0001 23.0 1.4 1 23 519 541 519 541 0.98
7 15 3.8e-06 0.00038 21.2 1.2 3 23 549 569 547 569 0.98
8 15 9.3e-06 0.00092 20.0 2.4 1 23 575 597 575 597 0.98
9 15 0.00082 0.081 13.9 0.2 1 23 603 625 603 625 0.99
10 15 6.2e-06 0.00062 20.5 0.3 1 23 631 654 631 654 0.94
11 15 1.8e-05 0.0018 19.0 1.3 1 23 660 682 660 682 0.98
12 15 0.00012 0.012 16.5 4.7 1 23 688 710 688 710 0.98
13 15 6e-06 0.0006 20.6 0.2 1 23 716 739 716 739 0.96
14 15 3.7e-06 0.00036 21.3 0.9 1 23 745 767 745 767 0.96
15 15 3.6e-06 0.00035 21.3 4.5 1 23 773 795 773 795 0.99

Sequence Information

Coding Sequence
ATGCCTGGAAAACTGCACCGCAGGGGCCAGATTGATGTATTTGAAATGCCAATAGATGAAGCATCCAAGTGCAAATACTTTCTAGTGTACGAAGAGCAAATATCCAAGTTTATTGTGCTAAAGGCACTGAAGAGAAACAATGCACAGGAGGTGGCACTTAAGTTAATAGAGGCACTCTCTATCATTGGAGCACCTCAAGTTTTGCAAAGTGGGAACGGAAGGGCATTTGCCATGCAAGTTGTTCATGAAATGCGTTTACTGTGGAAGGATATTACAATTTTGCATGGAGATATGTTCAAGAACGAAGATGGGGACAGGGACTTCAAGGGTTTAATTAAATCGTGGCTAAACTTGAATCCGACTAAGACGTGGTGCGACAGCTTGAAATTCATCCAGATTCTCCAGAATTCAACGTTTCGTTGTCAAAACGGCAAAATTCCCTGCGACATTTTGTTCGGTCGGAACGTGTACGAAGAGTTCAGAAATTTGCACGGAGGCAATGAGACGACGTTGGAAATTTGGACTGAGGAGGATTGGATCGATCACAACTTAAATCTAACCAGGAACGAGAATGACATGGTGCAGAATGCGGAGCGCGTGTCAGATTTCGTAACACCTAAACGTATAAAGCGAAGAAACAGTGAAGATGATAATAATGTAAAAGAGTACGAGAGCGATGCGCATAGCGAGTTTCCGGAGGATCAGACTGAAAATTTGACTGATAACCACGACGTGAACGGATTTAAATTCGTCAACGTGAAGAGTGAAGTGGTGACGAACTCTTCGCAAATCGAGGACTCTGTATTCGACGACACGAAATACGACGATTCGTCCGGCGATAGCCGAGAAGGTTTGAAATGCCGAATCTGCCAGAAACAGTATATGAAGTTAGGCCACCTAAAGAATCACATGAAGACGcacatgaaggaaaaggaatttCAGTGCACCTTATGTAACAAGACATTCCGAATCTTAAGTTTGTACGAGAAGCACATGCGACAGTCTCACGGGCAGGATAAGCTGTTCAGTTTAGACGACGGTAATAACGTAGGTAAACGAAAGAGGACGAGACAGTCTGCCGCGAACGATTCCATTAAACTCGAGCAATCGTCGTTGGAAGAAGATGAGTCAAAGTCCACTCTTAGCAAAAGACTCAGCCAAGAGGATGGCAAGACATCTGCAACCGTTACGAGCCTGAAGTCCATCAAGTCGCTACGCCCTGGCAGAAGAAAAGCCGGAGACGGTCGGGCGAGCAAACTGAACGGAGATTCGAGTCTGGAGTGCACGTACTGTAAACAGAAGTTTAACTTTCCGAGTGTGTTAAAGCGACACATGCGTTCGCACACTAACGAAAGGCCATATGTTTGCGAAGTATGCAATAAAAGCTTCAAGCAACTCGGCCACCTCAGTCAACATTCCCTGACTCACAAAGACTACCGTTCCTTCCAATGTTCCGCCTGCGGGGTGAAGTTTGCCTCCCTCGATTCGCTAAAACTCCACTCTCAGTCTCACAAAGGTGAAACTACCCTCAAATCGAAGGAAATCTATCGTCTCTTCGAGTGCGACAATTGCAAGAAAGTCTTCACCACGAAGAGCGTCCTCGAACGACACATTTTCACGCACACTCACGAGAGGCAGTTTGGCTGCAAGATCTGCGGGAAACGATTCAAGCAGGCAGGTCACGTGAAGTCCCATATGCTGGTCCACACCGGCGAGCGAAAGTTCCAGTGCACCGTTTGCTCGAAACGCTTCAGTCTGTCGAATTCTTTGAAAAAGCACATGTACGTCCACAATGGCGAGAAACCTTACCAGTGCGATGTCTGCGGGGCTCGTTTTCTCGAGAAACGGAACCTGAACGGCCACCTAATGACGCACACGAACGAACGTCCGTTCTCCTGCAAGATTTGCGGCAAGAGATATACGTTGGCGGACACTCTTCGCAGGCACATAAGTGCGGCGCATGAAGACGGACGCACTTATCAGTGCGAGATCTGTGCGAAAATGTTCAAGCAACTGGCCCATTTATCGGTCCACAAGAAGGTGCACAACGATGAGAGGCCGTTTCAGTGTCACTTATGCGACAAGAATTTTAAGCACAAGAATGTGCTTAAGTCGCACTTAGCCATTCATGCGAATGTCAGACCATTCGAATGCGACGTCTGTAAAGCGACTTTCGTCCGGAAGACGAACTTACAGACTCATATCGCCTCAGCGCACATGAACGAGCGACCGTATACTTGTACGATATGCGGCAAAAGGTTTAAACAGATTTCTCATTTGAACGGTCATGTAGTCGTTCACAGTAATCTGATGCCTTATCAATGCGACTTTTGTGACAGACGATGCAACAGGcttgataatttgaaaaaacacATGCGTCTGCATACGAAGAACAAAGAGTAA
Protein Sequence
MPGKLHRRGQIDVFEMPIDEASKCKYFLVYEEQISKFIVLKALKRNNAQEVALKLIEALSIIGAPQVLQSGNGRAFAMQVVHEMRLLWKDITILHGDMFKNEDGDRDFKGLIKSWLNLNPTKTWCDSLKFIQILQNSTFRCQNGKIPCDILFGRNVYEEFRNLHGGNETTLEIWTEEDWIDHNLNLTRNENDMVQNAERVSDFVTPKRIKRRNSEDDNNVKEYESDAHSEFPEDQTENLTDNHDVNGFKFVNVKSEVVTNSSQIEDSVFDDTKYDDSSGDSREGLKCRICQKQYMKLGHLKNHMKTHMKEKEFQCTLCNKTFRILSLYEKHMRQSHGQDKLFSLDDGNNVGKRKRTRQSAANDSIKLEQSSLEEDESKSTLSKRLSQEDGKTSATVTSLKSIKSLRPGRRKAGDGRASKLNGDSSLECTYCKQKFNFPSVLKRHMRSHTNERPYVCEVCNKSFKQLGHLSQHSLTHKDYRSFQCSACGVKFASLDSLKLHSQSHKGETTLKSKEIYRLFECDNCKKVFTTKSVLERHIFTHTHERQFGCKICGKRFKQAGHVKSHMLVHTGERKFQCTVCSKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLMTHTNERPFSCKICGKRYTLADTLRRHISAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCDKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHIASAHMNERPYTCTICGKRFKQISHLNGHVVVHSNLMPYQCDFCDRRCNRLDNLKKHMRLHTKNKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00393739;
90% Identity
-
80% Identity
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