Cpra008865.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cryptocheilus praepositus
Gene Symbol
SCAND3
Assembly
GCA_033815515.1
Location
JAWWQZ010000197.1:11139186-11142695[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.0005 0.055 14.4 2.5 2 23 286 307 285 307 0.96
2 15 0.00055 0.06 14.3 3.8 1 23 313 336 313 336 0.96
3 15 8e-06 0.00088 20.1 1.8 2 23 425 446 424 446 0.97
4 15 5.7e-06 0.00062 20.5 1.8 1 23 452 474 452 474 0.98
5 15 0.85 93 4.3 0.0 6 20 485 499 484 501 0.92
6 15 9.3e-07 0.0001 23.0 1.4 1 23 516 538 516 538 0.98
7 15 3.5e-06 0.00039 21.2 1.2 3 23 546 566 544 566 0.98
8 15 8.6e-06 0.00095 20.0 2.4 1 23 572 594 572 594 0.98
9 15 0.00076 0.083 13.8 0.2 1 23 600 622 600 622 0.99
10 15 5.8e-06 0.00063 20.5 0.3 1 23 628 651 628 651 0.94
11 15 1.7e-05 0.0019 19.0 1.3 1 23 657 679 657 679 0.98
12 15 0.00011 0.012 16.5 4.7 1 23 685 707 685 707 0.98
13 15 5.6e-06 0.00062 20.5 0.2 1 23 713 736 713 736 0.96
14 15 3.4e-06 0.00037 21.2 0.9 1 23 742 764 742 764 0.96
15 15 3.3e-06 0.00036 21.3 4.5 1 23 770 792 770 792 0.99

Sequence Information

Coding Sequence
ATGCCTGGAAACCTGCACCGCAGGGGTCAAGTCGATGTAGTTGAGATGCCGATGGACGAAGCATCCAACTGTAAATACTTTTTAGTGTACGAAGAACAAATCTCAAAGTTTGTTGTGCTTAAAGCACTGAAGAAGAACAATGCGAAAGAGGTGGCACTTAATTTGATGGAGGTACTCTCCATCATTGGAGCGCCACAAGTTTTACAAAGTGGGAACGGAAGGGCATTTGCAATGCAAGTCGTCGACGAAATGCGATCTCTATGGAAAGACATCACAATTTTGCACGGGGACATGTTCAAAAATGAAGATGATTGTAGGGATTTCAAAGGCTTAATCAATTCGTGGTTAAATTTGAATCCAACTAAGACATGGTGCGACAGTTTGAAGTTTGTCCAGATTCTTCAGAATTCAACGTTTCGTTGTCAGAATGGCAAAATACCTTGTGATATACTCTTTGGACGAAACGTATATGAAGAGTTTAGAAATTTAAACGGTGGCAATGAAATCGCTTCTAAAATTTGGACTGAAGAGGAGTGGATCGATCACAACTTGAATCGAACCAGAAGCGATAATAACGCAATCCAAAACACAGGGCATGTTGCAAATTTCTTAACACCTGAATGTGTAAAGGAGAGGAACTGTCAAGATGATAATAATATAAAAGAGTACGAGAGTGATACGCACAGTGAATTTCCAGAAGACAACACAGAGAATTTGACTGATAACCACGGTGTGAATGgatttaaatttgttaacgTGAAAAGTGAATTAGTTACGAACTCTATGGAAATTGAGGATTCAGTATTCGGCGACACAAAATACGACGATTCATCCGGGGATAGTCGGGAAGACTTAAAGTGCAAAATCTGCCAAAAGCAGTACATGAAGTTAGGTCACTTAAAGAACCACATAAAAGCGCacatgaaagaaaaagaatttcaTTGCACTCAGTGTAACGAAACATTCCGAATTCTAAGTTTATACGAAAAACACATGAGACAGTACCACGGGCACGATAAACTGTTCAGTTTAGAAGAAGGCAATAACGTAAGTAAACGAAAGAGGGGCAGGCAGTCTACCGCGCACAATTTACCCACTCTCGACCAGTCATCGCTGAAGGAAAAAGATGTGAAGCCCAATCTTAGCACAGGAGGCCCTCAAGGCAATACATCAACGACCGTTACGAACCTGAAATCCATTAAGTCATTGCGTCCTGGCAGAAGAAAAGTCGGCGACACTCGCATGAACAAACTAAACGGAGATTCGAGTCTGGAATGCACGTACTGCAAACAGAAATTCAACTTCCCGAGTGTGTTAAAGCGACACATGCGTTCGCATACTAACGAGAGACCGTATGTTTGCGAAGTTTGCAACAAGAGTTTCAAGCAACTCGGCCACCTGAGTCAACACTCCCTGACTCACAAAGATTATCGTTCATTCCAATTTTCCGCCTGCGGGGTCAAATTCGCCTCTCTAGACTCACTAAATGTACACTCTCAATCCCAAAAAGGTGGGGTGACGAAGTCGAAGGAAGTCTACCGTTTGTTCGAATGCGACAATTGCAAGAAAGTCTTCACAACAAAGAGCGTTTTGGAACGACACATTTTCACGCACACTCACGAACGACAGTTCGGCTGTAAGATATGCGGGAAACGTTTCAAACAGGCAGGTCACGTCAAATCTCATATGTTAGTTCACACAGGTGAACGCAATTTCCAATGCACTGTTTGTTCGAAACGTTTCAGTCTTTCAAACTCCTTAAAGAAACACATGTACGTCCACAATGGCGAAAAACCTTATCAGTGCGACGTTTGCGGGGCTCGTTTTCTTGAAAAAAGAAATCTGAACGGGCATCTAATGACGCATACGAACGAACGTCCGTTTTCTTGTAAGATTTGCGGCAAAAGGTACACGTTGGCTGATACTTTACGTAGGCACATAAGTGCTGCGCATGAAGACGGAAGGACGTATCAATGCGAGATTTGTGCGAAAATGTTCAAGCAGTTGGCGCATCTGTCTGTTCACAAGAAGGTGCACACAGATGAGAGACCGTTTCAATGTCACTTGTGTGACAAGAATTTCAAGCATAAGAACGTGCTGAAGTCGCATCTTGCTATTCACGCAAATGTGAGGCCGTTTGAATGTGACGTGTGTAAAGCGACTTTTGTGAGGAAGACGAACTTGCAGACTCATATCGCTTCAGCGCACATGGATGAGAGGCCGTATACTTGCACGATATGCGGGAAAAGGTTCAAGCAAATTTCGCATTTGAACGGGCACGTAGTCGTTCATACGAATTTGATGCCTTATCAGTGCGACTTTTGTGACAGACGATGCAACAGGCttgataatttaaagaaacacaTGCGACTGCATACGAAGAACAAAGAGTCGGAGCGTTTGATGGTGAGAACTGAGGAGGCGGCGTTTTAG
Protein Sequence
MPGNLHRRGQVDVVEMPMDEASNCKYFLVYEEQISKFVVLKALKKNNAKEVALNLMEVLSIIGAPQVLQSGNGRAFAMQVVDEMRSLWKDITILHGDMFKNEDDCRDFKGLINSWLNLNPTKTWCDSLKFVQILQNSTFRCQNGKIPCDILFGRNVYEEFRNLNGGNEIASKIWTEEEWIDHNLNRTRSDNNAIQNTGHVANFLTPECVKERNCQDDNNIKEYESDTHSEFPEDNTENLTDNHGVNGFKFVNVKSELVTNSMEIEDSVFGDTKYDDSSGDSREDLKCKICQKQYMKLGHLKNHIKAHMKEKEFHCTQCNETFRILSLYEKHMRQYHGHDKLFSLEEGNNVSKRKRGRQSTAHNLPTLDQSSLKEKDVKPNLSTGGPQGNTSTTVTNLKSIKSLRPGRRKVGDTRMNKLNGDSSLECTYCKQKFNFPSVLKRHMRSHTNERPYVCEVCNKSFKQLGHLSQHSLTHKDYRSFQFSACGVKFASLDSLNVHSQSQKGGVTKSKEVYRLFECDNCKKVFTTKSVLERHIFTHTHERQFGCKICGKRFKQAGHVKSHMLVHTGERNFQCTVCSKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLMTHTNERPFSCKICGKRYTLADTLRRHISAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHTDERPFQCHLCDKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHIASAHMDERPYTCTICGKRFKQISHLNGHVVVHTNLMPYQCDFCDRRCNRLDNLKKHMRLHTKNKESERLMVRTEEAAF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01255843;
90% Identity
-
80% Identity
-