Basic Information

Insect: Prenolepis imparis
Gene Symbol: salm
Assembly: GCA_030444845.1
Location: JAUDTA010000005.1:1702738-1722786[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 2.7e-05 0.0053 18.6 1.0 1 23 439 461 439 461 0.98

2 9 1.1e-05 0.0022 19.8 2.1 1 23 467 489 467 489 0.98

3 9 5 9.9e+02 2.0 3.3 3 23 858 878 857 878 0.92

4 9 4.9e-08 9.6e-06 27.2 0.6 1 23 884 906 884 906 0.97

5 9 6.8e-05 0.013 17.3 2.6 1 23 916 938 916 938 0.98

6 9 0.014 2.7 10.0 3.2 2 23 1247 1268 1246 1268 0.97

7 9 0.035 6.8 8.8 1.0 1 14 1274 1287 1274 1288 0.92

8 9 6.6e-07 0.00013 23.6 2.1 3 23 1497 1517 1495 1517 0.96

9 9 2.2e-07 4.4e-05 25.1 0.9 1 23 1523 1545 1523 1545 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	2.7e-05	0.0053	18.6	1.0	1	23	439	461	439	461	0.98
2	9	1.1e-05	0.0022	19.8	2.1	1	23	467	489	467	489	0.98
3	9	5	9.9e+02	2.0	3.3	3	23	858	878	857	878	0.92
4	9	4.9e-08	9.6e-06	27.2	0.6	1	23	884	906	884	906	0.97
5	9	6.8e-05	0.013	17.3	2.6	1	23	916	938	916	938	0.98
6	9	0.014	2.7	10.0	3.2	2	23	1247	1268	1246	1268	0.97
7	9	0.035	6.8	8.8	1.0	1	14	1274	1287	1274	1288	0.92
8	9	6.6e-07	0.00013	23.6	2.1	3	23	1497	1517	1495	1517	0.96
9	9	2.2e-07	4.4e-05	25.1	0.9	1	23	1523	1545	1523	1545	0.98

Sequence Information

Coding Sequence: ATGGTGGTACAGTACCGAGATGGTAgagtggtggtggtggtggtggtagAGAGTGGCAATGGTAgtggtgatggtggtggtggtggtggttcATTACACGGCTCCGTAACACCTTGCCGCACAGTATCCGTGAGTGGTGCACCTGTGAGGAAGTGTGCGGCGGTTGCATACACGCGTCCGATAGGCCACGTACTCTATACAACGAGCAAGAAAGCATATTATGTACGTAGGCACACCGCGCGCGCGATCGGGGTTGAAGGAAGGCGGTCCGAGGAGACAGGTGAAGAAAATGACTTCACATCAGATGGCGAGGAGAGCGCTGGTGGAGCAGGAGGCGAAGAAGCCGTCGATCTTACCGCGGCGAGATCTCATCAGGGCGACGAAGACGACAAGGATGCCGACGATGCTCTGGGCGAGGACGAAGAAGACGGCGGTGATGAACAAGACGAGCAATACGAGGACGAGGAGGGCTCGCGAAAACAGATTCGCCATCGACAGGACGCGGAGAACAACAACAGTTTTGTCGGGAGTGGTTCAACTTCCGCTGGAATATTTCCACCTGCTGGAACTAGTCATGTCACTCTCGAGGCCCTTCAAAATACGAAAGTTGCGGTCGCGCAGTTCGCTGCAACCGCCCTCGCTGGTGGAGTCGATAGCGACGCGGCATTACAGGATCTGGCCATTCTACAAAGTACGCTATACAATCTTCAGCATCAACAGGTACTCCAGTTACAGTTTATCAGCCAGCTTCAGCAACAATTATCGGTCACTCAAAAGCAATCGGTAGCGCCACCGTCATCGATAGAGCCAGCTGATAGCAAGGAGGCCTCGTCGTCTCCCATCATCCATCCGAAACCATTGTCGAGTCTCACATCACCACCTTCTTCCCGGCCACCGAGTCACCACCATTCATCACCAGCGCCACTGACGCCGAATCTGCTTCAAGAACGACCCACCTCGACGAGCAGTGCCGCCTCTCCATTGAATCTACCCCTGTCTTCGTCCGGCACTACGTCGACTACCGCTACGACTACCAGCAGTCAAATCTTACTGTCGCATCAAATGCCGCCTCTTTGCTCGATCAGCTCTTCCCTCGCTTCGTCGATCATAACGAATAACGATCCACCGCCGCTTCACGAGCCGAACACCCTGGAGATGCTTCAGAAACGAGCTCAGGAAGTGTTGGACAATGCGAGTCAAGGTCTATTAGCCAACAACCTTGCTGATGAGCTAGCGTTCAGAGGCAGTAAAGGCTCACGACTTTCGCCTTACGATTCGAAAACGAGCGGCGGTCGCGGCGAGCCCTTCTTCAAGCATCGATGTCGTTTCTGTGGCAAGGTCTTCGGCAGCGATTCAGCGCTACAGATCCACATACGATCCCATACAGGTGAGCGACCCTTTAAGTGCAACGTCTGCGGCAGCCGATTCACCACCAAGGGCAACCTGAAGGTTCACTTTCAGAGGCATACGACCAAGTTTCCACATGTAAAGATGAATCCGAATCCCGTTCCAGAACATCTAGACAAATATCATCCGCCCCTCTTGCAGCAAATGGCTGCTTCCGGGCAACGGCCAATATCTTCACCTCCACCGCCCCTCGCCATTCATCATCCCTCGTGTCATCCGGCACGTAGGGAGCACAGTTTCCTACCACCACAGCCGCCTTTACCTCTCAGTCTCTCCTCGCCCGGCATGATCCTTTGCCGATTACCGGTTATTAATCACCGGGACGATCAGGATGTGCCGGAAAACCTTAGTAAACCCGTAACCGCTGCCCCGCCGACGTCCCCTACTTCCCCCGCCGCTGTATCGAACTCTCATCATTCCTTTCACGACAATCATCatcaacaacaacaacaaaagCAGCAGCTCGAGCAGAGGGAGGAGATAAAGCTCGAGCAGAGATCGCCTGGACAGGAGCAATACCAGCAACGACCGATGAGCCAGGAAGACGCCGGGCGTATAACCCCGAAGAGAGAACCTGAAGAGACGGACGAACCCGTGGAAACGGAAGACGGTGAGGATTTTGAGGAGACAACGAGGCGATCTCTCAACTCACCTTCATCCTTGATGAACCCGTCGTTTCAGCCGCAAACGTACGAGGATTGTAGTATGGATAGCAAGATGAGTGGACGATTAGAGGGCGATGGAGAGATGGAAATAGACGAAGAGACGGAGGAACAACCGGAGAACCTTTCTGGCAAAGATACGATCAATCGTTTACCCCAACAGATGATGGCATATCCTGGAGCATCTCCGGCTAGTAGTAGCGCGAGTAGCGGTAGTCTTCAGACATCCTTTGCTGGGATTCTATTCCCAAGCGCCCCGATTCATCACCAAATACCTCCTCATCTTCCGATGGTTTCCGCTGCTGGACAGACACCGGCCGTCTCCGCGAACGAGATGATCGATCCATCTAAGGATCCAGCGATTTATTCGAGCTTGTTACCGCGACCGGGTAGCAATGACAATTCTTGGGAAAGCTTGATCGAGATAACGAAAACTTCGGAGACGGCGAAATTGCAGCAGCTAGTCGATAATATCGAGCACAAGCTGAGCGATCCTAATCAGTGTATCGTTTGTCATAGAGTGCTCTCGTGCAAAAGCGCGTTACTAATGCATTATCGCACTCACACGGGCGAACGTCCTTTTAAGTGCAAAATCTGCGGTCGCGCGTTTACCACCAAGGGCAATCTAAAGACTCACATGGGAGTGCATAGAGCTAAACCGCCACTGAGAGTGTTGCACCAGTGTCCGGTGTGTCACAAGAAATTCACGAACGCCCTTGTACTTCAGCAACACATACGTCTTCACACCGGCGAACCTACCGATCTCAGTCCGGAGCAGATTCAAGCCGCAGAAGTAAACGAATTTCCAGGTTGTTATTCTCAACCACACCTTTCCTTCTTCCCGCAAGGATTCGCTTCAATGCATCCGGCAGGTGCTGGCTTTACCTTAGGATTCCCTGGATCTAGACCACCGACCATTGAGCAACAATCGAATGAAAATGACGTCGACTTGAAGGAGGAATCTCAGCAACAACGGCAAAGATTTATGGAAGAGCACAGCGAAGAGATGGAAGATCAGGATGACGAGGAGCAGGATCGCAGAGAAGACGACGATAGGTGCGAGATGAATCGCGATAGACGTAGTGCCGAGATGATGGAGAAGGAACAGGAGCACGAAAGCGAGGAGCACCTAACCGAGCACAGAGACATGATAATCCCCATGTTTTCAACTTCGCTGGCGGCCCTCGAGAACCAAGTGAAGACCATCACGACGACGATCGCCACGACGACGATCGCGAACACAACCAGATCGCCGCCGTCCTTTCACCGATACAATGGTAGCGAAAAGAGCGACAGCTCGCCGACGTCCGGCGCCCCGCTCGATTTGACACCTCGCGCTTCGTCCACTCCGGCATCGGTGGCTTCCGCGTCGCCGACtccgccaccgccgccgccgccgccgccgtctCAGATTGCACCGTCGCACCATCCGTCGCATCCCTTCAGCATGTTTGCCGGCTTGCTGCAAGCGGTCTCGTCCGCACCCGCCACCAGCACACCAGGCACGTCCAACATAAATAGCGTCACATCGATGAGCGCGATCAACCCGGGAAGCGCTCCCGTCAGCGGACCCCTAGCCTCGCTAACCACCTCAGCTGTACTAGCCGCGTCATCGCCTTACAATCCTCTCGGTCTAGTTGTCGGAGGGCCAACAGTACGTGGCAACACCACTTGTAAATTCTGCTACAAGACGTTCGCATGTCAATCCGCATTGGAGATACATTACCGGAGTCATACGAAGGAACGACCCTTCAAGTGCACTATATGCGACCGAGGTTTTTCCACGaagAACGACGATTCCGGTCAGCAAGTATGTTCCTGCGCGGACCAACCCTTCGCCGCGAAGGGTCCGATCCCCCCACAACCCAATCCCCAATACCGCTCGTACCCGGCGAGATCGGAAACCGCCGGAAATCGTGAGAAACCGAAACGCAGGCGGCGGCGGCCTGAGGAGCGGAAGAACCGGGGGCGGACAGGAGCAGGAGGGGGGCGAAGGCTGACGTCTGTTTATCCTGCCGTCCGCCTGCCCCCGCTGATGCCACCCGCCCTCGGACTTCTACCCTCGGACCACGTCTTCCTGGGTAATATGAAGCAGCACATGTTGACTCATAAGATTCGCGATATGCCGCCGCATCTATTCAGCGATGCAAAGCCAccacagcagcagcagcagcaacaacaacaacaacaacaacaacaacagcagcagcagcagcaacagcaatGTCAGGATCACGAAACTTCCAGGAGCCCGATGTGCCCCGATGATTCTAGCCTACCACCCCCGCCTCCACCGCCACCACCTCCCCCACCGATGCCACCTACGTCAATCGAATCCGCGATACCAATAAAGAGATCCCCGCCGGAAGGGGATTTGCCGGCGCCAAAGAGACCAACCAGCGTGTCGAGCAAGCACTTGTGCCAGATTTGCAATAAGAATTTCTCCTCGTCTTCGGCGCTCCAGATCCATATGAGAACCCACACTGGCGACAAACCGTTCCGATGCACCGTCTGCCAGAAAGCGTTCACCACCAAAGGCAATCTCAAgGTGCATATGGGTACTCATATGTTCACCAACGGAACGTCGCGTCGAGGTCGACGAATGTCATTGGATCTACCTCCCCTGCCAATCACACCCAAGGACTCGGAGTTTCTGCAACGACGACCGGACCTTTTTTATCCCTATCTTCCCGCACCATTCCTTAACGGCGTCCAGCAGAAGCTGAACGAGATCTCGGTGATTCAAAGTAACAACGGGTTGCCGCCTCATTCCTTGGGCGCGGGCAAGTACGCGGCCAGTCTATTCGGTTCGGTGTACGGGGCCGGCGGGGGCGGTTTCCCCTTGGACAAGCAACCGATGGCGCCGACCAGCAACGGACCTCTGGTGGACGGCAAGTCCGCCATCCCGTCGGGCTCCATGCTCTTCCAAACGCCGTCGCCCGCGCACTCGCCCGGCGCGCCGTCGTCCAACGGCGGTAACCAGAACTCGATTAACGTACCGTCCTGGACCGGCGACGCTCTTCAGCATCACTTCGACCGAGAAACACCGAGCAGAACCGAGAACGACGCCACGCCGCCCACCGCCGCGCGTCTACCGCCGCCGACAGCGAGGGGAGAGGGATTAGCCGCGTGA
Protein Sequence: MVVQYRDGRVVVVVVVESGNGSGDGGGGGGSLHGSVTPCRTVSVSGAPVRKCAAVAYTRPIGHVLYTTSKKAYYVRRHTARAIGVEGRRSEETGEENDFTSDGEESAGGAGGEEAVDLTAARSHQGDEDDKDADDALGEDEEDGGDEQDEQYEDEEGSRKQIRHRQDAENNNSFVGSGSTSAGIFPPAGTSHVTLEALQNTKVAVAQFAATALAGGVDSDAALQDLAILQSTLYNLQHQQVLQLQFISQLQQQLSVTQKQSVAPPSSIEPADSKEASSSPIIHPKPLSSLTSPPSSRPPSHHHSSPAPLTPNLLQERPTSTSSAASPLNLPLSSSGTTSTTATTTSSQILLSHQMPPLCSISSSLASSIITNNDPPPLHEPNTLEMLQKRAQEVLDNASQGLLANNLADELAFRGSKGSRLSPYDSKTSGGRGEPFFKHRCRFCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTTKFPHVKMNPNPVPEHLDKYHPPLLQQMAASGQRPISSPPPPLAIHHPSCHPARREHSFLPPQPPLPLSLSSPGMILCRLPVINHRDDQDVPENLSKPVTAAPPTSPTSPAAVSNSHHSFHDNHHQQQQQKQQLEQREEIKLEQRSPGQEQYQQRPMSQEDAGRITPKREPEETDEPVETEDGEDFEETTRRSLNSPSSLMNPSFQPQTYEDCSMDSKMSGRLEGDGEMEIDEETEEQPENLSGKDTINRLPQQMMAYPGASPASSSASSGSLQTSFAGILFPSAPIHHQIPPHLPMVSAAGQTPAVSANEMIDPSKDPAIYSSLLPRPGSNDNSWESLIEITKTSETAKLQQLVDNIEHKLSDPNQCIVCHRVLSCKSALLMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPLRVLHQCPVCHKKFTNALVLQQHIRLHTGEPTDLSPEQIQAAEVNEFPGCYSQPHLSFFPQGFASMHPAGAGFTLGFPGSRPPTIEQQSNENDVDLKEESQQQRQRFMEEHSEEMEDQDDEEQDRREDDDRCEMNRDRRSAEMMEKEQEHESEEHLTEHRDMIIPMFSTSLAALENQVKTITTTIATTTIANTTRSPPSFHRYNGSEKSDSSPTSGAPLDLTPRASSTPASVASASPTPPPPPPPPPSQIAPSHHPSHPFSMFAGLLQAVSSAPATSTPGTSNINSVTSMSAINPGSAPVSGPLASLTTSAVLAASSPYNPLGLVVGGPTVRGNTTCKFCYKTFACQSALEIHYRSHTKERPFKCTICDRGFSTKNDDSGQQVCSCADQPFAAKGPIPPQPNPQYRSYPARSETAGNREKPKRRRRRPEERKNRGRTGAGGGRRLTSVYPAVRLPPLMPPALGLLPSDHVFLGNMKQHMLTHKIRDMPPHLFSDAKPPQQQQQQQQQQQQQQQQQQQQQQCQDHETSRSPMCPDDSSLPPPPPPPPPPPPMPPTSIESAIPIKRSPPEGDLPAPKRPTSVSSKHLCQICNKNFSSSSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMGTHMFTNGTSRRGRRMSLDLPPLPITPKDSEFLQRRPDLFYPYLPAPFLNGVQQKLNEISVIQSNNGLPPHSLGAGKYAASLFGSVYGAGGGGFPLDKQPMAPTSNGPLVDGKSAIPSGSMLFQTPSPAHSPGAPSSNGGNQNSINVPSWTGDALQHHFDRETPSRTENDATPPTAARLPPPTARGEGLAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00417805;
90% Identity: iTF_00869103;
80% Identity: -