Pimp012776.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Prenolepis imparis
Gene Symbol
ttk
Assembly
GCA_030444845.1
Location
JAUDTA010000005.1:3566199-3591268[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.56 1.1e+02 5.0 0.5 6 20 358 372 357 374 0.94
2 9 1.3e-06 0.00025 22.7 2.5 1 23 621 643 621 643 0.98
3 9 4.4e-05 0.0087 17.9 2.2 1 23 649 671 649 671 0.98
4 9 2e-06 0.00039 22.1 0.3 2 23 680 701 680 701 0.98
5 9 6.5e-05 0.013 17.4 0.1 3 23 709 729 707 729 0.97
6 9 2.1e-07 4e-05 25.2 3.0 1 23 735 757 735 757 0.98
7 9 3.5e-06 0.00069 21.4 0.7 1 23 763 785 763 785 0.98
8 9 5.4e-05 0.011 17.6 7.4 1 23 791 813 791 813 0.98
9 9 0.00047 0.092 14.7 1.4 1 21 819 839 819 840 0.94

Sequence Information

Coding Sequence
ATGATGGGAGAAGTGATTCGTGTTTCTGGGAGGGCACCGGATGTCGGTGACATCCTGAAGGAGGCTATGCTGTCGCAGAGATTTGCCGATGTGGCCCTGTGTTGTCCAGGAGGCCAGAGATTCCTCGCGCATCGTCTGGTCCTATCAGCAGCGAGTCCTTATCTCCAgGAGGTATTGTTGGCGCATAGCAAGGCCACCGCTCATTGCGAGCCAATCACGGTGATCCTGGCTGAAACGGAAGCGCCGGAACTCGCGGCTCTTCTCGGTTTCGTTTACACCGGAAGTGCCACGGTTCCGCGGATGCGACTGGACGCGTTTCTCCGCGCTGCCGAGACCCTACGCATTCGACTGCCACCGGTGCCGGTGACGACGACCTGCAGTGAACGAGTGCAAGCGGACAGTAAACTGGAGGACGTAAAGGACGTGAAAGTTAACCCTAAGTATCTACGGTGCGATCAGTATCCTTGGTACAGATCGGGGAGACCGTCTTACGAAGATCCGCTCGACAGGAAGGAGTCCAGGATATTCCCGACTGACGGCAGCAGAGACGTCTTCAGGAATTCCGGGACGCTTCGCGAAATCAACAATCCTGGTCCCAGCTCGTTTGGTCCAAGCTGTTCGAACGAGTGGCCAATCGACGGTTTCGCGTATCGGGATAGAGCGATGGATGATACTTCCGCGGAGAATCGAGATCGCAGCTCGATGATACTCGCCGATAAAAATCGCATGATAGCTCCTAGTAGCGAATCGTCTTTCGATGTTTATCAGCGAGACGCTACGTGTCTTCCCGATAGACCGTTCGCGGAAGGATACGGTAGTCTGGATCCTTCGGAGAGGATCAGATTATCGGGATACGAGAGATCGCAGATGAATCGTTCGACGGAGAAGCCGATGACGGACGAGGACGTTCACGCGGCAGGATCGGGAGGTGGTGACTCTTACACCCGAAGGACACCCGACGAGTGTCCCTACCAGAGCACGATGCCGTCCTTGCAGTGTCGGACGACGAGGTCGTTCGAGAGGACCGATTACAGTTCGCAGACGGCGGCGACGTCGGGCGAGGATCTCAGCTGCGGCGAAAGTTGTTGTAGGTGGAAAACCGTCCGCAGGCACGTGGCCAATCGCGTCATCGCATCGCCATGGCGCCAGATTATCAGACCTCATCATTCACCGAGGATCCCGCGATCCGTCATATCCCAGCAACGTCACGTCGATGACGAAATTCAAAAGAAGCCTTTAACTCCAGAACCAATTCGATCCACGGTAATATCGATGAGCCCGAGGGTCCATTCCCCGAGTAGGAATACGCCGGGTAGAAACGACGGGTTTTACGCCGTCGAGGTTCCTACCAGTTGCGAGATGAGCTTTAACAATGATACCGGATCGCGCGAGATGATCGGTGATTGTCCAGAGACGAGCGTGCAGGAGATCTATCGATCTCCACCAGCTCCGTTCGCACCCGGCAATCAAATCGCGCCGCTCGCGAACACGCCGAGGAGCAACGAACCGCCCTTTCAGAACGTCAGCAACACGCACACGCGATTGCTACCCACCGTCGTTAACGACACCGTTATCACGAATGCCGGCGGATATACGACGCAGATCCCGATTCCGCAGACGCCGCAGAAGCACGAATTATCGCATCCGATCAGCAGACTCTGCGACACGATCGAGTCCGACGAGAAGAGGGAATCTTCGAGGACGGAAGTCACGAAGAACGGAAGTCAGACGGCGAACACGGAGAAGAACGCGGGGGAGGAGAGGATCGCGAGGATTCTTGTTAATAGcgataataacaataacaacGAGGCGATCGTCAGCACGATCGAGATGGCTCAGCGTGGACGACCGACCGATGATCACAGGTGCGATCAGTGCGGAAAGACCTTCGTCACGAGAGCATCGCTCAAGGTGCACAGCCGAACACACTCCGGCGAGAAGCCGTTCCGCTGCGTCGATTGCGGCAAACAGTTCTCGCAGCTGCGCAACTACAAGTACCACCGCAGCGTCCACGAGGGCACGCGGGAGTTCGCGGCGACTTGTCCGGAATGCGGCAAGTACTTCAACGATCGCGGTTACCTGAGCTCGCACATGAAGATCCATCGGAATCGCAAGGAGTACGGATGCGCGGAATGCGGCAAGAGCTTCAACCAGCGCGTGGCCTACAACATGCACGTGCGCATACACACGGGCGTGAAGCCGCATCAGTGCGAGCAATGCGGCAAGGCGTTTTCGCGAAAGATGTTGCTCAAGCAACACCTGAGGACCCATTCCGGCGAACGGCCGTATCAGTGCCAGGTCTGCCAGAAAGCGTTCGCCGATCGCTCCAACATGACCCTTCACACTAGGCTGCACTCCGGCCTCAAGCCGTATCAGTGCAACCTGTGCTCCAAGGCCTTCACCAAGAAGCACCACCTCAAGACCCATCTCAATTATCATACCGGCACCAAGCCGTACTCCTGCTCCAACTGCGGCGGCAGGTTCTCGCAGAGTAGCAACATGAGGACCCACTTCAAGAAGTGTATCGTTAACAACGCCGTAGGCGTGGGATTGGTCAAATCCGGCGACGAGACTGGGCTCGATCGCGCCGATGCCGAAGGCAACGTGGCCCTCACGCCGCCCAATTCCGATCAGGAATCCAGCATCCTGACACCGATACAGAGCAACACGTAG
Protein Sequence
MMGEVIRVSGRAPDVGDILKEAMLSQRFADVALCCPGGQRFLAHRLVLSAASPYLQEVLLAHSKATAHCEPITVILAETEAPELAALLGFVYTGSATVPRMRLDAFLRAAETLRIRLPPVPVTTTCSERVQADSKLEDVKDVKVNPKYLRCDQYPWYRSGRPSYEDPLDRKESRIFPTDGSRDVFRNSGTLREINNPGPSSFGPSCSNEWPIDGFAYRDRAMDDTSAENRDRSSMILADKNRMIAPSSESSFDVYQRDATCLPDRPFAEGYGSLDPSERIRLSGYERSQMNRSTEKPMTDEDVHAAGSGGGDSYTRRTPDECPYQSTMPSLQCRTTRSFERTDYSSQTAATSGEDLSCGESCCRWKTVRRHVANRVIASPWRQIIRPHHSPRIPRSVISQQRHVDDEIQKKPLTPEPIRSTVISMSPRVHSPSRNTPGRNDGFYAVEVPTSCEMSFNNDTGSREMIGDCPETSVQEIYRSPPAPFAPGNQIAPLANTPRSNEPPFQNVSNTHTRLLPTVVNDTVITNAGGYTTQIPIPQTPQKHELSHPISRLCDTIESDEKRESSRTEVTKNGSQTANTEKNAGEERIARILVNSDNNNNNEAIVSTIEMAQRGRPTDDHRCDQCGKTFVTRASLKVHSRTHSGEKPFRCVDCGKQFSQLRNYKYHRSVHEGTREFAATCPECGKYFNDRGYLSSHMKIHRNRKEYGCAECGKSFNQRVAYNMHVRIHTGVKPHQCEQCGKAFSRKMLLKQHLRTHSGERPYQCQVCQKAFADRSNMTLHTRLHSGLKPYQCNLCSKAFTKKHHLKTHLNYHTGTKPYSCSNCGGRFSQSSNMRTHFKKCIVNNAVGVGLVKSGDETGLDRADAEGNVALTPPNSDQESSILTPIQSNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00280128;
90% Identity
iTF_00869079;
80% Identity
iTF_01254938;