Pimp006167.1
Basic Information
- Insect
- Prenolepis imparis
- Gene Symbol
- -
- Assembly
- GCA_030444845.1
- Location
- JAUDTA010000002.1:22318006-22322472[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.034 6.7 8.8 2.6 1 23 406 428 406 428 0.97 2 19 0.01 2 10.5 0.8 2 23 466 487 465 487 0.97 3 19 0.00013 0.026 16.4 2.3 1 23 555 577 555 577 0.98 4 19 0.0033 0.65 12.0 2.6 1 23 580 602 580 602 0.98 5 19 4.1e-05 0.008 18.0 1.3 1 23 653 676 653 676 0.97 6 19 3e-05 0.0059 18.4 1.3 1 23 682 704 682 704 0.96 7 19 0.00075 0.15 14.0 0.7 1 20 710 729 710 734 0.94 8 19 6.3e-05 0.012 17.4 0.9 2 23 809 830 808 830 0.95 9 19 0.00054 0.11 14.5 4.1 1 23 879 901 879 901 0.96 10 19 0.00033 0.066 15.1 0.7 1 20 906 925 906 927 0.94 11 19 0.00096 0.19 13.7 0.4 2 23 938 959 938 959 0.97 12 19 3.4e-05 0.0067 18.3 0.6 2 23 998 1019 997 1019 0.97 13 19 3.1e-05 0.0061 18.4 1.6 1 23 1024 1046 1024 1046 0.95 14 19 0.00017 0.034 16.0 2.8 1 23 1052 1074 1052 1074 0.98 15 19 5.5e-06 0.0011 20.7 0.4 1 23 1090 1112 1090 1112 0.95 16 19 4.5e-07 8.7e-05 24.2 0.6 1 23 1118 1140 1118 1140 0.99 17 19 0.00022 0.043 15.7 0.2 1 23 1146 1168 1146 1168 0.97 18 19 0.029 5.6 9.0 6.9 1 23 1174 1196 1174 1196 0.96 19 19 0.0061 1.2 11.2 0.6 1 20 1202 1221 1202 1223 0.90
Sequence Information
- Coding Sequence
- ATGGACGCCGTAGAAATAAATACGTCGGGTCCGCCGCAGAGCGAGGACGCGATCGCGTCCGCGATGAAAATATGCCGCGTGTGCCTGCTGGACAACCTGATGATGCGCGACCTCTTCGTCGAGAGCGAGGTCGCGTCCCTCTCCATGAAAGCGATGAGCTTCACCAACGTTAAGATGTTACCAGGTGACGGTCTACCGGCACAAGTATGCTGCGTGTGCGCCGACAAACTGGAATCGGCGTATGAATTTAAGTTACAAGTGGAGCAGGCCGACAGCGTCCTCAGGGACAGGTTTGTCGGGGGGATAATAAAGGAGGAATTGTTCCTCAACGAGGTCGAGATACACTTGGACGCCGAAAGGAATGACATAGAGGAGATGACGGTCAACACCGATTATGAATCTACTGTCGCAGTTCTGCCAGAAGAGTCAGACGCTGAGAAGAACTTTTTGAAAGAGCAATTAATGATGTTGGAAAATGAGAAACTGACTAATACGGAAGAAATGCAACAGGATCCAGAACAGGATCATTCGCAGGAGATTACGCAAGAAGTTAGTCAGAGTATTGTGGAAGAGCAGCAAGAATTTGTTGATACGGAGGATAATGATATGTCGAGCACTATCAAAGAATCTAGGAATCAAAAACTTTGTACGAACGAAAGTATCACTCCCAGTTATATAGAGGCGATTCCAACAGAGGAACACGATTACATTATACAGCAACAGTGTGTGTTGCAGAGTGAACAATTTCCTTTACAGGAAAGGATACAGATGGACACACAAGTTGAACAGAGTATAGCGGAATGTGAAGAAACATTATCTGAATTAAATCAAGAGGATCAAGTTGAACAAATTCAAGAGAATCAAGCTGAACAGATTCAAGAAAATCAGGCTGAACAAATTCAAGAGAGTCAAGCGGAGCAAATTGAAGAGGCTCAAATGGAGCAAATTCTAGAGACTCAAGCGGAGCAAATTCAAGAAAATCAATCTGAGCAAAATCAAATTAAGAAGAAATCTTTAAATGAAGAAATGTCTATGACTGACAACGAGCCGGCGGTGGGACAAGATACACCTCAAAACGAAACCAGAAGAAGTAAACGTAGATTAGCTCGTCGAACGTTCGCTGAACGGGATTCCGACGAGGAGAACTATTTCGAAAATCTTAATCTTAGTTCTCGGCTGAAAAAAGCACAAGCGGATAAGGCCGAGAAGATCTTTTTTATGTGTTATCTGTGTGATAAACAGTTCCTGTCGAAGGACGTTCTAAAGGAGCACATGCACTCTCATGAAGAAGTGAGGAAAGCACTCTCCCTAAAGAAAACGCCGGAGAAGCCGCAAAAGACGCAGTCAACCATCGTTACCCCCACGAAGAGTCCGCCATCTGGAAAAAAAGCCAACAAGTGCCCTTATTGCGGTAAAGAGTATCTGTACATAAACTCATTTACCAAACACATTAAACAACACGAGCGGGAGCGAGAGGAGGCGAAAGAGGACCCTATGCCGCTCGAAATTTCGTTCCACGAGGATGAGCATAGTCTAGACTTCGAGGATAACAATTCGGACAGAGAATGTAGAAAACGAACGAAAAGAGGAAGTACAGGCGACGACGCCACGACGAGCGACAACGAGCAAGATAAAAGAAGAAAGCGCAGTCGCGTCGAAGAATTCGAATGCGACAAATGTTCAGAGAAATTTGATACGAAGCGAAGCTTGCAAAAGCACTCGCTCACGCACGTTAGCTTCAAGTGTAACCTATGTCATGAAGAGTACGACAGTCTGGAGCAATTGAGAGATCACCGAACGAAGCATGTTGTCGAAGGTGTCCTCACCGAGCAGGATTTAGAAGAAGACATGAAGCAGATGGTCAAGGGCGTCGAAAACGACGATGACGAAGGCAACAAGAACGACGAGGAAGAGGACAATGAATTCGGCGAATTTATCGAACAAAATGCGAAGGAATTCAAGTGTCAGAAGTGTCCAATGATGTTCGCGCGAAAGAAGTTGCTGTCCAGACACGTGGAGACGACGCATTCTGGGACTAACAACTACGAGTGCAAGATATGTCGTCAGCAGTTCACGCGGAAGGATCTTCTGCGCAGACACGCCGAACAGCATGCGCGAATAAAGACCTACAAGTGCACTCAGTGCAACAAGACTTTTGGCAACGAGCTCACTCTGAGAAATCACCTAGTCGCCACGAATCACAAGACGTTTATACACGGACAGGAATACGATCCGAACAAGCGTATAAAGCGCGTGGCCGCGAAAGCGGCGCAGAAGATAATCGACAAGATCAAGACGGAGGACGGTCTGGAGGATTACGACGACGATAACGACAGTGTCGATTACGACGCCAAGTTGGAGGGGTCTTATTATCGCCGTAAACGCGACGCTACACCAAAGAAGTACAATTGTAAGAAGGATTTAGAGTGCGCGACGTGTAATAAGAGATACAGTTCGAAACAAGCGTTGACCAAGCACATGGAGCAGCATGTGAAGGACGAGAAGGCAGCGGAGAAGCTGAAGAAGGCCGCTTCGGAGAAGAAGGAGCCGCTGAAGACGATAGTGGGCGATAaagatgacgacgacgactcgGACTCGGACTTCGAGAGCGGTCTCGATTGGCCGATGGACAGTCACGAATGCGTTACGTGCAAGAAACGTTACAGCACGAAGAAGTCGCTGCTGCGGCACCAGCTGCTGCACGAGGAACCGAACTTCGAGTGCGACATTTGCAACGTCAAGTTTTATCGCAAGGACAAGCTGAAGGCGCACTACGACAAGTGCTCCGAGAAGAATCCCGATCAGGTAAGAAAGTGCAATATTTGCGGCGACAGTTTCGAAAACAATGAGATGCTGCGGGAACACCGGGCCAAACACGTCACCGAGGGTATCCTGACGGAGGAAGATTTGAGGGACATCGAGCCGAAACCGGAGGACAAGAAACCGGGCGAGAAGATCGGCCGGAAGAGGAGAACCGATATCGTCGGCCTCGAATGTACCGAGTGCAACAAACAGTACACCTCCAGGAAGGGTCTTCTGCGGCACATTCAGGTACACGAGGGCAAGAAATACCTGTGCGACATATGTCCGAAGAAGTTCTATCGGCGGGAACATCTCAAGATCCACGTGGCCAAGCACAATATGGTGAAGCCGTACAAGTGCACCCGCTGCACCAAGCGCTTCATCAAAGAGGAGCAGCTCAACAACCATCTGTCCAAGCACGATCGTACCTTCAAGAAGAGCAAGGAGACCGACAGCTCCAAGAGATTCCTCTGTGAGATCTGCAGCAAGAGCTTCACGCAGTCGACGACGCTGATAGCCCATTTGCGGGCGCACAACGGCATCAAACCGTACGTGTGCGAGGTCTGTTCGAGGCCGTTCACCACCAACGCCTACCTGAAGATGCATATGCGCACGCACACCCAGGAACGGCCGTACATCTGTCAGTTCTGCTCGCGAGCGTTCGCGCGAGCCGACACCCTGGCGAATCACCTGACGTCGCACACCGGCGAGGCCAAGTACCACTGCAAATGCTGTCCGAAGAACTTCCGGCGATTGAAGTCGCTGAAGGAGCACATGTTCATCCACACGGGTCAGCGACCTTACGAGTGTCCGACTTGCGATCGCAAGTTCAACAACAACGGCAGCCGCTACGCGCACAGCAAGCGCTGCAAGCAGAACCTCCTGCAGAATCAGAACCGGGCGCAGCAGATgatgcagcagcagcagcagcagcaggtgcagcagcaacaacagcCGCAGCAACAGCAAATCCAGCAAGTGCAGATACAGGTGCAGCCGCAACCGGTGCCGGTTAGGCTGCATCAGACCACGCTCGGTCAAGCGCAGATCGTCAAGGCCCAGAACATAAAGACGATCGCTATAGCGAGGCAGGAACCGACCGTAGTTGCCACGACGCAGCAAGCCATGATGCAGCAGGAGATCCTGATGCCGCTCATTTTGCCGCTTACCGTCACCCTCACCGACGTGGGCGAGGAGGTGATTCTACCCGAGGGCACAAAGATATTCACCACTTCCTAA
- Protein Sequence
- MDAVEINTSGPPQSEDAIASAMKICRVCLLDNLMMRDLFVESEVASLSMKAMSFTNVKMLPGDGLPAQVCCVCADKLESAYEFKLQVEQADSVLRDRFVGGIIKEELFLNEVEIHLDAERNDIEEMTVNTDYESTVAVLPEESDAEKNFLKEQLMMLENEKLTNTEEMQQDPEQDHSQEITQEVSQSIVEEQQEFVDTEDNDMSSTIKESRNQKLCTNESITPSYIEAIPTEEHDYIIQQQCVLQSEQFPLQERIQMDTQVEQSIAECEETLSELNQEDQVEQIQENQAEQIQENQAEQIQESQAEQIEEAQMEQILETQAEQIQENQSEQNQIKKKSLNEEMSMTDNEPAVGQDTPQNETRRSKRRLARRTFAERDSDEENYFENLNLSSRLKKAQADKAEKIFFMCYLCDKQFLSKDVLKEHMHSHEEVRKALSLKKTPEKPQKTQSTIVTPTKSPPSGKKANKCPYCGKEYLYINSFTKHIKQHEREREEAKEDPMPLEISFHEDEHSLDFEDNNSDRECRKRTKRGSTGDDATTSDNEQDKRRKRSRVEEFECDKCSEKFDTKRSLQKHSLTHVSFKCNLCHEEYDSLEQLRDHRTKHVVEGVLTEQDLEEDMKQMVKGVENDDDEGNKNDEEEDNEFGEFIEQNAKEFKCQKCPMMFARKKLLSRHVETTHSGTNNYECKICRQQFTRKDLLRRHAEQHARIKTYKCTQCNKTFGNELTLRNHLVATNHKTFIHGQEYDPNKRIKRVAAKAAQKIIDKIKTEDGLEDYDDDNDSVDYDAKLEGSYYRRKRDATPKKYNCKKDLECATCNKRYSSKQALTKHMEQHVKDEKAAEKLKKAASEKKEPLKTIVGDKDDDDDSDSDFESGLDWPMDSHECVTCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEMLREHRAKHVTEGILTEEDLRDIEPKPEDKKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMVKPYKCTRCTKRFIKEEQLNNHLSKHDRTFKKSKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQFCSRAFARADTLANHLTSHTGEAKYHCKCCPKNFRRLKSLKEHMFIHTGQRPYECPTCDRKFNNNGSRYAHSKRCKQNLLQNQNRAQQMMQQQQQQQVQQQQQPQQQQIQQVQIQVQPQPVPVRLHQTTLGQAQIVKAQNIKTIAIARQEPTVVATTQQAMMQQEILMPLILPLTVTLTDVGEEVILPEGTKIFTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01077655;
- 90% Identity
- -
- 80% Identity
- -