Nful011762.1
Basic Information
- Insect
- Nylanderia fulva
- Gene Symbol
- -
- Assembly
- GCA_005281655.1
- Location
- NW:2005966-2012902[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.081 6.5 7.1 3.1 1 23 436 458 436 458 0.97 2 19 0.0073 0.59 10.4 0.8 2 23 495 516 494 516 0.97 3 19 9.8e-05 0.0079 16.3 2.3 1 23 591 613 591 613 0.98 4 19 0.0035 0.28 11.4 1.8 1 23 622 644 622 644 0.98 5 19 4.5e-05 0.0036 17.4 2.3 1 23 695 718 695 718 0.98 6 19 3.1e-05 0.0025 17.9 1.9 1 23 724 746 724 746 0.95 7 19 0.00017 0.013 15.6 1.6 1 23 752 776 752 776 0.93 8 19 4.6e-05 0.0037 17.3 0.9 2 23 851 872 850 872 0.95 9 19 0.00017 0.014 15.6 5.0 1 23 925 947 925 947 0.97 10 19 0.00015 0.012 15.8 0.7 1 20 952 971 952 973 0.94 11 19 0.059 4.8 7.6 0.3 2 23 984 1005 984 1005 0.96 12 19 2.5e-05 0.002 18.2 0.6 2 23 1044 1065 1043 1065 0.97 13 19 2.3e-05 0.0018 18.3 1.6 1 23 1070 1092 1070 1092 0.95 14 19 0.00013 0.01 16.0 2.8 1 23 1098 1120 1098 1120 0.98 15 19 4e-06 0.00032 20.7 0.4 1 23 1136 1158 1136 1158 0.95 16 19 3.3e-07 2.6e-05 24.1 0.6 1 23 1164 1186 1164 1186 0.99 17 19 0.00016 0.013 15.6 0.2 1 23 1192 1214 1192 1214 0.97 18 19 0.021 1.7 9.0 6.9 1 23 1220 1242 1220 1242 0.96 19 19 0.0044 0.36 11.1 0.6 1 20 1248 1267 1248 1269 0.90
Sequence Information
- Coding Sequence
- ATGGACGCCGTGGAAATAAATACGTCGGGTCCGCCGCAGAGCGAGGACGCGATCGGGTCCGCGATGAAAATATGCCGCGTGTGCCTGCTGGACAACCTGATGATGCGCGACCTCTTCGCCGAGAGCGAGGTCGCGTCCCTCTCCATGAAAGCGATGAGCTTCACCAACGTTAAGATGTTACCAGGTGACGGTTTACCAGCACAAGTGTGCTGCATGTGCGCCGACAAACTGGAGTCGGCGTATGAATTTAAATTACAAGTGGAACAGGCCGACAGCGTCCTCAGGGACAGGTATGTCGGGGGAATGATAAAGGAGGAGTTGTTCCTCAATGAGGTCGAGATACACTTGGACACCGAAAGGAATGACATAGAGGAAATAAATGTCAACACTGATTATGAATCTACTGTCGCAGTTTTGCCAGAAGAGTCAGACGTTGAGAAGAACTTTTTGAAAGAACAATTTATGATCTTGGAACACGAAAAATTGACTAATCCGGAAGAAATACAACAGGATCCAGAACAGGATCATTCGCAAGAAATTACGCAAGAAGATGGTCAAAGTATTGCAGAAGATTCGCAGCAAGAATTAGTTGAAACAGAGGATAATGATATGTCAAGCACTATTAAAGAATCTAGGAATCAAAAATTTTGCATGAACGAAAGTATCACTTCCAGTTATATGGAGTCGATTCCAACAGAGGAACACGATTACATTGTGCAGCAACAGTGTGTGTTGCCGACTGAACAATTTCCTTTACAGGAAAGGATACAGATGGATACACAAGTTGAACAAAGTATAGCAGAATGCCAAGAAACATTATCTGAATTAAATCAAGAGAATCAAGTTGAGCAAATTCAAGAAAATCAAGCTGAACAGATTCAAGAAGATCAGACTGAACAAATTCAAGAGAATCAAATGGAGCAAATTGAAGAGACTCAAGTGGAGCAAATTCAAGAGACTCAAATGGAGCAAATTCAAGAGATTCAAATGGAGCAAATTCAAGAGACTCAAATGGAACAAATTCTAGAGACTCAAGCAGAGCAAATTCAAGAGAATCAATCTGAGCAAAATCAAACTGAAAGAACTGACAAGAAGAAATCTTTCAATGAAGAAATGTCTACAACTGATAATGAGCCGATGGTGGGAATACAAGATACTCCTCAAAATGAAACCAGAAGAAGTAAACGTAGATTAGCTCGTCGAACGTTTGCTGAACGGGATTCCGACGAGGAGAATTATTTCGAAAATCTGAATCTTAGTTCTCGATTGAAAAAAGCACAAGCGGATAAGGTAGAGAAGATCTTTTTTATGTGTTATCTGTGTGATAAACAGTTCCTGTCGAAGAACGTTCTGAAGGAGCACATGCACTCTCATGAAGAAGTGAGGAAAGCACTCTCCTTAAAGAAAACGCCGGAGAAGCCGCAGAAGTCGCAGACCAACGTTACCCCCACGAAGAGTCCACCATCTGGAAAAAAAGCCAACAAGTGCCCTTATTGCGGTAAAGAGTATCTGTACATAAACTCGTTTACCAAACATATTAAACAGCACGAGCGGGAGCGAGAGGAGGCGAAGGAGGATCCTATGCCGCTCGAAATTTCGTTCCACGAAGATGAGCATAGTCTAGACTTCGAGGATAATAATTATGATAACAATTCGGACAGAGAATGTAGAAGACGATCGAAGAGAGCAAATACAGGCGATGGAAACGATGACGCCACGACGAGCGACAATGAGCAGGATAAAAGAAGAAAGCGCAGTCGCGTTGAAGAATTCGAATGCGACAAATGTTCAGAGAAATTTGATACGAAGCGAAGCTTGCAAAAGCACTCACTCACGCACGTGAGCGGGTTTTGCAAGCTTCGCTTCGAGTGCACCCTGTGTCACGAAGAGTACGACAGTCTAGAGCAGTTGAGGGATCATCGAACGAAACATGTGGTCGAAGGCGTGCTCACTGAGCAGGATTTAGAAGACATGAAACAGATAGTCAAGAACGTCGAGAATGACGATGACGAAGATAACAAGAACGATGAAGAAGGAGAGGGCAATGAATCTGGCGAATTGGTCGAACAAAATGCGAAGGAATTCAAGTGTCAGAAGTGTTCGATGGCGTTCGCGCGAAAGAAGTTCCTGTCGAGACACATGGAAACGATGCATTCTGGAACTAACAATTTCGAATGCAAGATATGTCATCAGCAGTTCGCGCGGAAGGATCTTTTGCGCAGACATGCCGAGCAACACGCCCGAGTAAAGACCTACAAGTGCACTCAGTGCAACAAGACCTTCGGTAATGAACTCACTCTGAGAAATCACCTGCTCACCACGAATCACAAGACGTTTATACACGGACAAGAATACGACCCGAACAAGCGTATAAAGCGCGTAGCCGCGAAAGCGGCGCAGAAGATCATCGACAAGATCAAGACAGAGGACGGTCTGGAGGATTACGACGACGATAACGACACCGTTGATTACGACGCCAAGTTGGACGGGCCTTATTATCGTCGTAAACGCGACGCTACACCAAAGAAGTACAATTGTAAGAAGGATTTAGAGTGCGCGACGTGTAATAAGAGATATAGTTCGAAGCAAGCGTTGACCAAGCACATGGAGCAGCACGTGAAGGACGAGAAAGCGGCGGAGAAGTTGAAGAAGGCCGCTTCGGAGAAGAAGGAAACGCCGAAggcaacgacgacgacgacgacgataggcgataacgacgacgacgacgatgactcGGACTTTGAGAGCGGTCTCGATTGGCCGATGGACAGTCACGAATGCACCACGTGCAAGAAACGTTACAGCACGAAGAAGTCGCTGCTGCGGCACCAGCTGCTGCACGAAGAACCGAACTTTGAGTGCGACATTTGCAACATCAAGTTTTATCGCAAGGACAAGTTGAAGGCGCACTATGACAAGTGCTCCGAGAAGAATCCCGATCAGGTAAGAAGGTGCAATATTTGCGGCGACACTTTCGAGAACAATGAGATTCTGCGAGAACACCGGGCTAAACACGTTACCGAGGGTATTCTAACGGAGGAAGATTTGAAGGACATCGAGTTGAAACCGGATGAGAAGAAATCGAACGAGAAGATCGGCCGGAAGAGGAGAACCGATATCGTCGGCCTCGAATGTACAGAGTGCAACAAACAATACACTTCCAGGAAGGGTCTTCTACGACATATTCAGGTACATGAAGGTAAAAAATACTTGTGCGACATATGTCCGAAGAAGTTCTATCGTCGGGAACATCTCAAGATTCACGTGGCCAAGCATAATATGGTAAAACCGTACAAGTGTACCCGCTGCACCAAACGCTTCATCAAGGAGGAGCAGCTGAACAATCATTTGTCCAAGCACGATCGTACCTTCAAGAAGAACAAGGAGACCGATAGCTCCAAGAGATTCCTCTGCGAGATCTGCAGCAAGAGCTTCACGCAGTCGACGACGCTGATAGCCCATTTGCGGGCGCACAATGGTATCAAGCCGTACGTGTGCGAGGTCTGCTCGAGACCGTTCACCACCAACGCCTACCTAAAGATGCATATGCGCACGCACACCCAGGAACGGCCGTACATCTGTCAGTTCTGCTCGCGGGCGTTCGCGCGAGCCGACACTCTGGCGAATCATCTGACGTCTCACACCGGCGAGGCCAAGTATCACTGCAAATGCTGCCCGAAGAACTTCCGGCGACTGAAGTCGCTGAAAGAGCACATGTTTATTCACACGGGCCAGCGACCTTACGAATGCCCGACCTGCGATCGCAAGTTCAACAACAACGGCAGCCGCTATGCACACAGCAAGCGCTGCAAGCAGAACCTCCTGCGGAATCAGACCCGGACGCAATATCTAATACAGCAGCCGGAGCAAacgcagcagcaacagcaacccCAGCAACAGCAACCCCAGCAAGTGCAGATACAGGTGCAGCAACAGCCGCAGCAGATGCCGGTACCGGTCAGGCTACATCAGACCACCCTCGGCCAGGCACCGGTAGTCAAGGCCCAGAGCATCAAGACAATCGCTATAGCGAGGCAGGAACCGACCACGGTAACTATCCCGGCGCAGCCAGCCATGATGCAGCAGGAAATCCTGATGCCTCTCATTTTGCCGCTCACCGTCACTCTCACCGACGTGGGCGAGGAGGTGATACTACCAGAGGGTACAAAGATATACACCACTTCCTAA
- Protein Sequence
- MDAVEINTSGPPQSEDAIGSAMKICRVCLLDNLMMRDLFAESEVASLSMKAMSFTNVKMLPGDGLPAQVCCMCADKLESAYEFKLQVEQADSVLRDRYVGGMIKEELFLNEVEIHLDTERNDIEEINVNTDYESTVAVLPEESDVEKNFLKEQFMILEHEKLTNPEEIQQDPEQDHSQEITQEDGQSIAEDSQQELVETEDNDMSSTIKESRNQKFCMNESITSSYMESIPTEEHDYIVQQQCVLPTEQFPLQERIQMDTQVEQSIAECQETLSELNQENQVEQIQENQAEQIQEDQTEQIQENQMEQIEETQVEQIQETQMEQIQEIQMEQIQETQMEQILETQAEQIQENQSEQNQTERTDKKKSFNEEMSTTDNEPMVGIQDTPQNETRRSKRRLARRTFAERDSDEENYFENLNLSSRLKKAQADKVEKIFFMCYLCDKQFLSKNVLKEHMHSHEEVRKALSLKKTPEKPQKSQTNVTPTKSPPSGKKANKCPYCGKEYLYINSFTKHIKQHEREREEAKEDPMPLEISFHEDEHSLDFEDNNYDNNSDRECRRRSKRANTGDGNDDATTSDNEQDKRRKRSRVEEFECDKCSEKFDTKRSLQKHSLTHVSGFCKLRFECTLCHEEYDSLEQLRDHRTKHVVEGVLTEQDLEDMKQIVKNVENDDDEDNKNDEEGEGNESGELVEQNAKEFKCQKCSMAFARKKFLSRHMETMHSGTNNFECKICHQQFARKDLLRRHAEQHARVKTYKCTQCNKTFGNELTLRNHLLTTNHKTFIHGQEYDPNKRIKRVAAKAAQKIIDKIKTEDGLEDYDDDNDTVDYDAKLDGPYYRRKRDATPKKYNCKKDLECATCNKRYSSKQALTKHMEQHVKDEKAAEKLKKAASEKKETPKATTTTTTIGDNDDDDDDSDFESGLDWPMDSHECTTCKKRYSTKKSLLRHQLLHEEPNFECDICNIKFYRKDKLKAHYDKCSEKNPDQVRRCNICGDTFENNEILREHRAKHVTEGILTEEDLKDIELKPDEKKSNEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMVKPYKCTRCTKRFIKEEQLNNHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQFCSRAFARADTLANHLTSHTGEAKYHCKCCPKNFRRLKSLKEHMFIHTGQRPYECPTCDRKFNNNGSRYAHSKRCKQNLLRNQTRTQYLIQQPEQTQQQQQPQQQQPQQVQIQVQQQPQQMPVPVRLHQTTLGQAPVVKAQSIKTIAIARQEPTTVTIPAQPAMMQQEILMPLILPLTVTLTDVGEEVILPEGTKIYTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01254977;
- 90% Identity
- -
- 80% Identity
- -