Pimp008013.1
Basic Information
- Insect
- Prenolepis imparis
- Gene Symbol
- bab1
- Assembly
- GCA_030444845.1
- Location
- JAUDTA010000003.1:8565820-8570782[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1e-17 3e-14 53.9 0.0 1 43 28 71 28 73 0.95 2 2 2.3 6.7e+03 -1.6 1.4 6 15 151 160 149 163 0.88
Sequence Information
- Coding Sequence
- ATGTGGCAAAAGTGCTGGAACACCAACCAGAGTCTGGTGCACAATCTGCGCTTCCGGGAACGCGGACCTCTCAAGTCCTGGCGGCCGGAGACCATGGCGGAGGCGATCTTCAGCGTCCTGAAGGAAGGACTTTCCCTCAGCCAGGCGGCAAGAAAATACGACATCCCCTATCCGACGTTCGTTCTGTATGCGAATCGAGTACACAACATGCTGGGTCCTAGCGCCGATGGTGGGGCAGATTTGCGCCCGAAGGGAAGAGGAAGGCCGCAGAGGATTCTGCTGGGCGTCTGGCCAGATGAGCACATCCGCGGTGTAATTCGCGCGGTGGTGTTCCGTGACGGACACTCGCCTCATATCGTCAAAGAGGAGCCGACCACGATGTACCCTACCCTGGCGAACTACGCGGCCTGCAACGGTCCGGAAGGCGCGGTCAGTCCGGGTGCGGCGGCCGCGGCCGCGGTTGCGGCAGTCGCCCAAGGTCTACGACATCAGATGTGCAGTATGGTTGCGGCAGCGCACTCGCAGCAGCACGACATGATGGCGACGAATTTGTCGACGAATCTGTCGACGAACCTGTCCTCCAGTCTGTCGTCGAACTTGCAGGCAGCGATGCAGGCCAGCCAGCACCATAATAACAACAATACGAGCGGCAGTAACGCGAGTGGCCTCGGTGGCAATAGCGGTATCGGCAACAACGGCAATTCCCCGTTGAATCTTGGTCTGGCGAGCCCAGGCTCGGGCGGACCGCCCGAGAGCCCGATGGAGAGTCCTTTGGCGAGTCCGTTGGGTCAGCTGATGGATCCAGCGGGTCACATACCCAGCAGTGTCGAGGTCGGCATCGGTGTGAGCGGTATGACGTATAAGCCGGCGCGAAGCTTCGTCAGTCCGCGCCCGGAAACTCTCTTCCAGGAGGACATCGCCGACCTGGTGAAGAGTCCTCACGGTCTCAAGGACAAGGACAAGATCCCGGTGAAGCTCGAGCCGCTCACGGACTCGCGCTGCGAATAG
- Protein Sequence
- MWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDGHSPHIVKEEPTTMYPTLANYAACNGPEGAVSPGAAAAAAVAAVAQGLRHQMCSMVAAAHSQQHDMMATNLSTNLSTNLSSSLSSNLQAAMQASQHHNNNNTSGSNASGLGGNSGIGNNGNSPLNLGLASPGSGGPPESPMESPLASPLGQLMDPAGHIPSSVEVGIGVSGMTYKPARSFVSPRPETLFQEDIADLVKSPHGLKDKDKIPVKLEPLTDSRCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01266802;
- 90% Identity
- iTF_00982886;
- 80% Identity
- -