Pmac061715.1
Basic Information
- Insect
- Portevinia maculata
- Gene Symbol
- -
- Assembly
- GCA_949715645.1
- Location
- OX454526.1:302145175-302147188[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.36 1.5e+02 5.6 0.1 1 23 181 206 181 206 0.92 2 13 0.0024 1 12.5 3.1 3 23 214 234 212 234 0.97 3 13 6.7 2.8e+03 1.6 0.2 3 10 241 248 239 250 0.84 4 13 2.2 9.3e+02 3.1 2.5 3 13 270 279 269 292 0.75 5 13 1.4e-05 0.006 19.5 5.3 1 23 298 320 298 320 0.98 6 13 0.00011 0.046 16.7 0.4 1 23 326 348 326 348 0.95 7 13 5.6e-05 0.023 17.6 1.5 2 23 354 375 353 375 0.97 8 13 0.037 15 8.7 3.4 2 23 383 405 382 405 0.91 9 13 0.00018 0.074 16.0 2.3 2 23 431 452 430 452 0.98 10 13 0.00015 0.064 16.2 4.3 1 23 458 481 458 481 0.97 11 13 8.1e-05 0.034 17.1 1.5 1 23 487 510 487 510 0.96 12 13 2.2e-05 0.009 18.9 0.1 1 23 516 538 516 538 0.98 13 13 1.8e-05 0.0076 19.1 3.7 1 23 544 566 544 566 0.99
Sequence Information
- Coding Sequence
- ATGAATATCTTGGAAAATACTTGCAGAACgtgtggaaaaccatcggggcAGGGAAATGGCTCCGATCTATATTCAATGTACACATCCACGGAGTATTACAACGAACTAAAAAGTGTCGAAGAGGAATTCGAAATATGGAACCTAAATATAGCTCAAAATGATGGGCTGCCTCAGAAGATTTGCTTGAATTGTTTCGATAGCTTCTGTCAAATTCACAACTTTCGCTTGATATGCCAAGAGGCGCAGATGAATTTCGGCGAATTATGCACTGGCCTGGATATCATAATTAAGGTTGACCCAGAATACGGTGACGTTGATGTTGATTATCCCGAAGACTTCGAGGGCGAGCAAACGATTACAGTCCAAGAACACTATCAGTTTCCCACCGCTGAACCACCACAACTCTCATTTTCTCCGTTGCAACAGAAAACATGTGAAAAACTCCTAGAGACAGTAAATTCAGACGAGGAAACTCGTAAGGAGAGAGATCGCCTGGATGCACTAGAAGAATTAAACGCAGAGCTTCCCgagtttaaaaaatttcagtgcgAATTCTGCTTTGACGTTTTAGGTTTTGATGATCCCGACCTGCTAAATCAGCATTATAATGAAATGCATGCTACCGAACTACCCTACGGATGTCCCAAGTGTGAAAAGTGTTTTGACACCAAAAGGAAACGGAACAGCCATGCTCGAGTTCACTACCGGGTTATAATCAACTGCACGATTTGTAATAAGAAAGTCCGAGGTGGGAAGCGAATGATGGCGCAGCATAATGAGCTGCATCACATCGAAAAAGATCGCGATTGCTTAACATGCGGCAAGAAGTTCACTAAAATTACTTTGAAGAAGTTTAACTACCACATGAGTTGGCATGATGAAACAAAGCTGCACAAGTGCAAGTACTGCGACAAAAAGTTCATTCAGTTGACGCATTTGGTAGTGCATGAAAGGACGCACACGGGAGAGAGTCCGTTTCTTTGCAGCGAGTGCGGAATGGGCTTTAAAAATACTGGCCTACTGTATACACACTTAAAAATGCACGGAAAAGGCGAACTTGTGTGCAATGTGTGTAGCAAAAagttCTTTCACCCTCAGGGCTTAAGACTGCATATGCAAATGCACGATcagaataggacaccccttcaCTGTGTTGTATGCAACAAGTCCTTTGGTTCCAATATGAACTTTAATTTACATAACCACAAGGTGCATGGTGCAGCTGCAACGCCGGGAGTCTTGAATATCTTGAATAAGCCTAAGATAAAGAAATCGTTTATCAAACCCAACAAATGCGAAAAATGCCCCGAATCGTTTGTGCTTCACACACAGCtgctaaaacatttaaaaacccATGACGAGTACAGACCCTATAGCTGCGTTCATTGTAAAAAGTCATTCAAGCGTGAAGCCCATATGAAGTTGCATGTCAATTCGATACACCTGAACCAAAAGCCACACAAGTGCTCATTCTGTGGATGGGGATTTACACTGAGAAGAAATCTCCGAGAACACATTGCCTCGAAGCATGAGAATAAGAGAGATTTTAAATGTGAGGTCTGTGGAAAAGCGTTTGCCATTGCCAAAGTACTGAAGACTCATATGATAAAGCACAGTGATAGGAAACCATATACCTGCAACATTTGCCAGAAGAGCTTCAGCATGCTGACTTGCCTCAAATCTCACATAAACTCTCATTTAAAGAGGAATGAGGTGAACGTCGCTGGTGGCGGCATTACTGATTTCGTTGTTTTAGATGAAACAACAACGCCCTAG
- Protein Sequence
- MNILENTCRTCGKPSGQGNGSDLYSMYTSTEYYNELKSVEEEFEIWNLNIAQNDGLPQKICLNCFDSFCQIHNFRLICQEAQMNFGELCTGLDIIIKVDPEYGDVDVDYPEDFEGEQTITVQEHYQFPTAEPPQLSFSPLQQKTCEKLLETVNSDEETRKERDRLDALEELNAELPEFKKFQCEFCFDVLGFDDPDLLNQHYNEMHATELPYGCPKCEKCFDTKRKRNSHARVHYRVIINCTICNKKVRGGKRMMAQHNELHHIEKDRDCLTCGKKFTKITLKKFNYHMSWHDETKLHKCKYCDKKFIQLTHLVVHERTHTGESPFLCSECGMGFKNTGLLYTHLKMHGKGELVCNVCSKKFFHPQGLRLHMQMHDQNRTPLHCVVCNKSFGSNMNFNLHNHKVHGAAATPGVLNILNKPKIKKSFIKPNKCEKCPESFVLHTQLLKHLKTHDEYRPYSCVHCKKSFKREAHMKLHVNSIHLNQKPHKCSFCGWGFTLRRNLREHIASKHENKRDFKCEVCGKAFAIAKVLKTHMIKHSDRKPYTCNICQKSFSMLTCLKSHINSHLKRNEVNVAGGGITDFVVLDETTTP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00725002;
- 90% Identity
- -
- 80% Identity
- -