Fcup021609.1
Basic Information
- Insect
- Ferdinandea cuprea
- Gene Symbol
- -
- Assembly
- GCA_963576555.1
- Location
- OY754961.1:4191466-4193475[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.75 1.1e+02 4.4 0.5 1 23 175 200 175 200 0.88 2 13 0.00078 0.12 13.7 3.8 1 23 206 228 206 228 0.98 3 13 0.82 1.2e+02 4.2 0.4 2 10 234 242 233 244 0.85 4 13 0.95 1.4e+02 4.0 1.9 3 12 264 273 263 286 0.78 5 13 1.1e-05 0.0017 19.5 5.3 1 23 292 314 292 314 0.98 6 13 1.8e-05 0.0027 18.9 0.3 1 23 320 342 320 342 0.95 7 13 0.00026 0.04 15.2 2.7 2 23 348 369 347 369 0.97 8 13 0.0021 0.32 12.4 1.6 2 19 377 394 376 397 0.92 9 13 0.00011 0.016 16.4 2.6 1 23 406 428 406 428 0.99 10 13 3.1e-05 0.0047 18.1 3.3 1 23 434 457 434 457 0.96 11 13 1.2e-05 0.0018 19.5 0.8 1 23 463 486 463 486 0.96 12 13 2.3e-05 0.0035 18.6 0.1 1 23 492 514 492 514 0.98 13 13 8.8e-05 0.013 16.7 4.2 1 23 520 542 520 542 0.97
Sequence Information
- Coding Sequence
- ATGAATGTTGTAGAAAATACTTGTCGAACGTGTGGGAAACCATCGGGTCAGGAAGATGGCTCCGATCTTTACCCAATGTACACGTCTACAGAGTATCACAACGAACTGGAAATGGTTCAAGAGGAATTCGAAATATGGAACCTAAATATTGCTCAAAGTGATGGTTTACCTCAAAAGATTTGCTTGACTTGTTTTGATAGTTTCTGTCAAATTCACAATTTTCGTATGATATGCCAAGAGGCACAGACGAATTTCGGCGAACTATGCACCGGGCTGGACATCATAATTAAGGGTGACCCGGAGTACGGAGATGTTGATGTGGATTTTCCGGAAGATTTCGAAGGCGAGCAAACGATTACAGTTCAAGAGCACTATCATTTTCCCGGCGCTGAACCAGTAGTGGAAGAGAAATCATGTGAAAAACTACTTGAGACAGTCGATTCGGATGAAGAGACACGCAAAGAAAGAGACCGCTTGGATGCGCTAGAAGAATTGAATGCCGAAATTCCCGAGTTCAAAAGATTTCAGTGCGAATTTTGTTTCCATGTTGTAGGTTTCGACGACCCAGAACTGTTGAATCAGCATTACAATGAAATGCACGCTACCGACCGACCCTACAAATGTCCAAAGTGTGATAAGTGCTTTGACATCAAGAGAAAACGCAACAGCCATGCTCGAGTTCATTACCGTGTTATACTGAAATGCCCGACTTGTGGCAAGAAGGTTCGAGGTGGCAAGCGGATGATGGCGCAACACAATGAGTTGCATCATATTGAGAAGGATCGAGATTGTTTAATGTGCGGAAAGAAGTTTAAAAGTATTACGCTCAAGAAGTTCAACTACCACATGAGTTGGCACGATGACACCAAACTCCATAAGTGCAAGTACTGCGACAAAAAGTTCATTCAATTAACGCACTTGGTAGTGCACGAAAGGACGCACACGGGGGAGAGTCCATTTCTGTGTAATGAGTGTGGAATGGGCTTCAAAAATTCCGGTCTCCTTTATACCCACTTAAAGATACACGGAAAAGGCGAGCTAACTTGTGATGTGTGTGCCAAAAAGTTCTTCCATCCCCACGGCTTGAGGCTGCATATGCAAATGCACGACCAGAATAGGGGAAACCTTCATTGTAATATTTGCGATAAATCCTTCGGTTCGACTATGAACCTCCGTCTACACAACCACAAGATAAAACAATCGTTTATAAAACCTTACAAATGTGACAAGTGCTCAGAATCATTTGTACTGCACACACAGCTCCTGAAGCATTTAAAAATCCACGACGAGTACAGACCTTATATCTGCGAACACTGTCAGAAATCATTCAAGCGTGAGGCCCACATGAGGCTGCATGTTAATTCTATTCATCTGAACCAAAAACCACACAAATGCTCAATCTGTGGATGGGGATTTACACTGAGAAGGAATCTCCGAGAGCACATTGCTTCGAAGCATGAGAATAAGCGAGATTTCAAATGTGAGATCTGTGGAAAGGCTTTTGCCATTGCCAAAGTGCTCAAAACGCACATGGTAAAGCACAGTGataaaaaaccatttacttGTAACATATGCCACAAGGCCTTCAGCATGCTGACTTGTCTCAAAACACACATAAATGGCCACCTGAAGAGGAATGAAGTAGATGTTGCAGGAGGAGGCATTACAGATTTTGTTGCAGATGAACCAGCAATCCCCAAAATAGAAATCTGA
- Protein Sequence
- MNVVENTCRTCGKPSGQEDGSDLYPMYTSTEYHNELEMVQEEFEIWNLNIAQSDGLPQKICLTCFDSFCQIHNFRMICQEAQTNFGELCTGLDIIIKGDPEYGDVDVDFPEDFEGEQTITVQEHYHFPGAEPVVEEKSCEKLLETVDSDEETRKERDRLDALEELNAEIPEFKRFQCEFCFHVVGFDDPELLNQHYNEMHATDRPYKCPKCDKCFDIKRKRNSHARVHYRVILKCPTCGKKVRGGKRMMAQHNELHHIEKDRDCLMCGKKFKSITLKKFNYHMSWHDDTKLHKCKYCDKKFIQLTHLVVHERTHTGESPFLCNECGMGFKNSGLLYTHLKIHGKGELTCDVCAKKFFHPHGLRLHMQMHDQNRGNLHCNICDKSFGSTMNLRLHNHKIKQSFIKPYKCDKCSESFVLHTQLLKHLKIHDEYRPYICEHCQKSFKREAHMRLHVNSIHLNQKPHKCSICGWGFTLRRNLREHIASKHENKRDFKCEICGKAFAIAKVLKTHMVKHSDKKPFTCNICHKAFSMLTCLKTHINGHLKRNEVDVAGGGITDFVADEPAIPKIEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01254285;
- 90% Identity
- -
- 80% Identity
- -