Pmac097228.1
Basic Information
- Insect
- Portevinia maculata
- Gene Symbol
- -
- Assembly
- GCA_949715645.1
- Location
- OX454529.1:6935848-6936348[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.3e-07 0.00017 23.7 0.0 17 39 20 42 10 48 0.82
Sequence Information
- Coding Sequence
- ATGGATGTAAAGAGAAAATATAACGTAGACGATATTTTAGAGgatattaaaaatgttctttcaaTACACGCAGCTTCAAGACATTATAATATTCCAAGACCCACACTCCAAAATCGGTTGCATAAACGttcttttaaaaaccaaaaaggacCCTTAACAATTCTAACAAATCAAGAGGAATCACAGATTGTAAATTGGATTTTTGAAAATCATGCAAGAGGCTTTCCAAGGCGGAAGCATGAAGTTTGTGGTGTTGTTAAGGAGTTTTTAGATGCTTGCCCAAGACAAAACgttttcaaaaacaataatcCTGGACGTAAGTGGTACATCGGTTTTTTGAAAAGGCATCCTGAAATAGCCAAAAGAACGCCTGAAGCTGTAACTGATGCTAGCGCCTGTGTATCTGAAAAGGATATAAGGGGATGGTTTCAGCAAATAGATGAATATTTCTTACGAAAAAAACTATGGGGATATTATAAAGGACCCCTCTCGTGTCTTTAA
- Protein Sequence
- MDVKRKYNVDDILEDIKNVLSIHAASRHYNIPRPTLQNRLHKRSFKNQKGPLTILTNQEESQIVNWIFENHARGFPRRKHEVCGVVKEFLDACPRQNVFKNNNPGRKWYIGFLKRHPEIAKRTPEAVTDASACVSEKDIRGWFQQIDEYFLRKKLWGYYKGPLSCL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01253501;
- 90% Identity
- iTF_01253504;
- 80% Identity
- -