Pmac088141.1
Basic Information
- Insect
- Portevinia maculata
- Gene Symbol
- -
- Assembly
- GCA_949715645.1
- Location
- OX454528.1:40386993-40387445[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.6e-11 8.3e-09 37.5 0.0 3 39 12 47 11 53 0.89
Sequence Information
- Coding Sequence
- ATGGATGTAAATagaaaatacgagtataacGTAGAAGACATTGATAAGGCTTTAGAGGATATTAAAAATGGTCTTTCAATACACGCAGCTTCAAGACATTATAATATTCCAAGAGCCACACTCCAAAATCGGTTGCATAAACGttcttttaaaaaccaaaaaggacACTTAACAATTCTAACAAATCAAGAGGAATCACAGATTGTAAATTGGATTTTTGAAAATCATGCAAGAGGCTTTCCAAGGCGGAAGCATGAAGTTTGTGGTGTTGTTAAGGAGTTTTTAGATGCTTGCCCAAGACAAAACgttttcaaaaacaataatcCTGGACGTAAGTGGTACATCGGTTTTTTGAAAAGCCATCCTGAAATAGCCAAAAGAACGCCTGAAGCTGTAACTGATGCTAGCGCCTGTGTATCTGAAAAGGATATAAGGGGATGGTTTCAGCAATAG
- Protein Sequence
- MDVNRKYEYNVEDIDKALEDIKNGLSIHAASRHYNIPRATLQNRLHKRSFKNQKGHLTILTNQEESQIVNWIFENHARGFPRRKHEVCGVVKEFLDACPRQNVFKNNNPGRKWYIGFLKSHPEIAKRTPEAVTDASACVSEKDIRGWFQQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01253827; iTF_01253502; iTF_01253503; iTF_01253504;
- 90% Identity
- iTF_01253504;
- 80% Identity
- iTF_01253502;