Pmac093704.1
Basic Information
- Insect
- Portevinia maculata
- Gene Symbol
- cheC
- Assembly
- GCA_949715645.1
- Location
- OX454528.1:98339180-98341003[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.6e-09 3.7e-07 32.3 0.0 1 38 15 52 15 58 0.91
Sequence Information
- Coding Sequence
- ATGCCACGAAATTACGTAAGGACGACACTACGCGCATCATGGTCTGAAGAAGACATGAATGAAGCGATGGAGAAGGTGATGAATAAAACGTTGGGAGTTAATGAGGCTAGCAGGGAGTTCAAAATACCATCAAGAACTCTGAGGAGGCATATTTTGAAAGGCATGTCGAATAAATCACTTGGTCGGTCAACAACTCTTTCGCTGGAACAAGAACAAAAATTGGTTGCCCACATAAAGAAGTTGGAGAAAGTTGGTTTCGCTCCTGACCGTAAAGACGTTAAAGAAATTGCGTTTCGGTTCGCCGATCGTCTGGGCGTAGCACACCGTTTCTCTAACGTCACTAAAACGGCTGGTAATGTGTGGCTCAAtggatttttaaaacgaaatccaGATATATCGACCAGGAAATCTGAAGGCCTATCACTAGCAAGAGCTTATGGTATGAATCGAGCCGatgtaaaagagttttttgacATTCTAAAATCTATATACGAAGAGCATGACCTTCTTAAGAACCCTGGGAACATTTACAATATGGTTGAGACTGGAATCCAAGTCAATAACAAAGCAGGGAAGGTTTTGGCATCAAAAGGAGCTAAGGACGTGTACACGCTTACAAGTTCCGAAAAAGGTGAAAACGTTACGGTCATAGCCTGTTGCAATGGGGAAGGCAACTTTTTGCCCCCCGTTCTAATTTTCAAGGGCACTTACACCAAGCCTCAGTTTTTCGATGGTCTCCCACCTGGTTCAGATGTGTACATGAACAAGAAGTCGTCATACGTTAACactgatttgtttttgaaatggttCCAGGAAATATTTCTACGCAAAAAGGCTCCAGGAACAACCTTGCTTATTCTTGATGGCCACAGCTCGCATTCCAATAACTATCAGTTGCTAGAGATCGCTGAACAGAACAATGTCATACTACTGTGCCTTCCTAGCCACACGACTCACGCTCTACAGCCGCTCGACAGATGTTTTTTCAAACCTTTCAAAACATACTTTTTTCAGGAGGCAAAAAATTGGATGATAAACAATAAAGATAAGAAACTAACTCGGTACGATGTATCAAAATTAATCGGAAAAGCTTGGGGAAAATCGGCGAGTGTATCAAATGGTATCTCTGCGTTAaaagcaacaggaatttttcCTTACGACCCAAGTGCTATACCGGATCACTTTTTTTCATTGTCGGATGCAATATataaacagaacttcattgaaACTAATCAAGACATTTTGGAATTTGATCAAAACACGCCTGAGCCACAACCGGGGCCATCTGGCCCTCAGATATCACCAACAAAAATATTGGGTGAAGTTCAGCCGCAAGCAAGTCCATCAGGAATAACTCCTTCAAAAATATTGACAGAAATTCGGCCAGTCCCAAAAATACCGCTTATGAATtccaaaaggaaacaaaaaacggTTGTTCTCACCTCACCAGAAAACATGAACAAACGAAAAGTTATGgctgaaaataagaaaaataaagaggATGCAAGGAACCGGAAGTTAGAGCTGAAGGAAAATGttgcaacaaagaaaaaaacaaaaaagaacagaAAACTTTATTCTGATAGCAGTGAAGACGAAGACGGTGACAATATAAACACCAGCGAAGATGAAATTTCAGATGAAGGGGATAGTAATAGGTGCATTGAGTGTACCGAAAATTATTTCAACACCCTTTCATCTGAAGACTGGATTCAGTGCATATCTTGCCAGGGTTGGTTGCACGAAttttgtacaatgtacataccgAATTGTAACAGCTGCGGCCGCAAAGCAAAGCGACAGGCCATGTTACCGAATGAATAA
- Protein Sequence
- MPRNYVRTTLRASWSEEDMNEAMEKVMNKTLGVNEASREFKIPSRTLRRHILKGMSNKSLGRSTTLSLEQEQKLVAHIKKLEKVGFAPDRKDVKEIAFRFADRLGVAHRFSNVTKTAGNVWLNGFLKRNPDISTRKSEGLSLARAYGMNRADVKEFFDILKSIYEEHDLLKNPGNIYNMVETGIQVNNKAGKVLASKGAKDVYTLTSSEKGENVTVIACCNGEGNFLPPVLIFKGTYTKPQFFDGLPPGSDVYMNKKSSYVNTDLFLKWFQEIFLRKKAPGTTLLILDGHSSHSNNYQLLEIAEQNNVILLCLPSHTTHALQPLDRCFFKPFKTYFFQEAKNWMINNKDKKLTRYDVSKLIGKAWGKSASVSNGISALKATGIFPYDPSAIPDHFFSLSDAIYKQNFIETNQDILEFDQNTPEPQPGPSGPQISPTKILGEVQPQASPSGITPSKILTEIRPVPKIPLMNSKRKQKTVVLTSPENMNKRKVMAENKKNKEDARNRKLELKENVATKKKTKKNRKLYSDSSEDEDGDNINTSEDEISDEGDSNRCIECTENYFNTLSSEDWIQCISCQGWLHEFCTMYIPNCNSCGRKAKRQAMLPNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01253605; iTF_01253616; iTF_01253617; iTF_01253618; iTF_01253782; iTF_00984158; iTF_00984159; iTF_01253578; iTF_01253613;
- 90% Identity
- iTF_01253605; iTF_01253616; iTF_01253617; iTF_01253618; iTF_01253782; iTF_00984158; iTF_00984159; iTF_01253578; iTF_01253613;
- 80% Identity
- -