Pmac086315.1
Basic Information
- Insect
- Portevinia maculata
- Gene Symbol
- -
- Assembly
- GCA_949715645.1
- Location
- OX454528.1:21771276-21771719[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.5e-12 8.1e-10 40.8 0.1 3 39 18 54 16 60 0.90
Sequence Information
- Coding Sequence
- ATGTCAAAGGCGAGCAAATTAGAAAACAGAAAGCGGGCAGAATGGTCGTCAGATGATATGGAAAGGGCCTTGAAGTCTATCCAACGTGGTTTTTTATCACAACATGAGGCGTCAAGGCGCTACAAGATTCCAAGAAGAACTTTGAGAAACCATATCAAGAGTGGTTCCGCTACAAGGAAACTAGGCAGGTCCACAACGCTTACACCCAAACAAGAAGATGATCTGTCCAGAAGGATCGTTAGACTCGCTGAAGTAGGCATGCCACTCACGCCAAAAATGTTGCAGTTCCAAGCCTCCGCATTTTGTACCTTCAACAACATTACCAGGAACTTTAATAATGCTAACTTCGTAGCGGGTAGGAAGTGGCTACGTTTGTTTTTGAAGAGACACCCAGAAATCTCTATGCGAAAATCGCAAATGATGAATCCAGCAAGAGCCCAATAG
- Protein Sequence
- MSKASKLENRKRAEWSSDDMERALKSIQRGFLSQHEASRRYKIPRRTLRNHIKSGSATRKLGRSTTLTPKQEDDLSRRIVRLAEVGMPLTPKMLQFQASAFCTFNNITRNFNNANFVAGRKWLRLFLKRHPEISMRKSQMMNPARAQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01223313;
- 90% Identity
- iTF_01253538; iTF_01253461; iTF_01253462; iTF_01253511;
- 80% Identity
- iTF_01253462;