Pper020614.1
Basic Information
- Insect
- Pocota personata
- Gene Symbol
- -
- Assembly
- GCA_963082735.1
- Location
- OY720429.1:245121898-245122305[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.8e-13 3.7e-10 41.0 0.1 3 39 18 54 16 60 0.90
Sequence Information
- Coding Sequence
- atgtcAAAGGCACACAAATTAGGGAACAGAAAGCGGGCAGAATGGTCGTCAGATGATATGGAAAGGGCCTTGAAGTCTATCCAACGTGGTTTTTTATCACAACATGAGGCGTCAAGGCGCTACAAAATTCCAAGAAGAACTTTGAGAAACCATATCAAGAGCGGTTCAGCTACAAGGAAACTAGGCTGGTCCGCAACGTTCACACCCGAACAAGAAGATGATCTGTCCAGAAGGATCGTTAGACTCGCTGAAGTGGGCATGCCACTCACGCCAAAAATGTTGCAGCTCCAAGCCTCCTCATTTTGTAGCGTCAACAATATTACCAGGAACTTTAATAATAAAGTGGCTACGTTTGTTTTTGAAGAGACACCCAGAAATCTCTATGCGAAAATCGCAAATGATGAATAG
- Protein Sequence
- MSKAHKLGNRKRAEWSSDDMERALKSIQRGFLSQHEASRRYKIPRRTLRNHIKSGSATRKLGWSATFTPEQEDDLSRRIVRLAEVGMPLTPKMLQLQASSFCSVNNITRNFNNKVATFVFEETPRNLYAKIANDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01253538; iTF_01253511; iTF_01253461; iTF_01253462; iTF_01253463; iTF_01253620;
- 90% Identity
- -
- 80% Identity
- -