Pmac008907.1
Basic Information
- Insect
- Portevinia maculata
- Gene Symbol
- bab1
- Assembly
- GCA_949715645.1
- Location
- OX454525.1:112442214-112446338[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-11 2.7e-09 39.1 0.0 4 45 384 425 381 425 0.92 2 2 1.4 3.2e+02 3.7 1.1 4 20 514 529 513 529 0.93
Sequence Information
- Coding Sequence
- ATGGGCACAATCACCGAAGGGCAAACCTATTGCCTgcgatggaacaatcacaagtcAAACTTAGTGGAAATCCTCGACGCACTCATCAAAATCGAAAGCTATGTCGATTGCACAATTGTCGTTGATGACCAGGTGCAATTCAAAGCACATCGCGTGGTGTTGGCAGCAAATTCCCCATATTTTCAGTCAATCCTACAGGATGTGCCAATGGATCATTGTAGCATTCTGTTTCCGGGAGTTCAGGGATTTGAAATGCGTGCACTTCTGGAATACATGTACACCGGGGAAGTGAATGTTACACAGAGtcaaattccaaaaataatgCGGATAGCTGAACAGCTTGAAGTAAAAGGACTCTTCGACATGGCAGATTTGAAGGAAAAATTCAATAGATTCGAAGAAAGTGGCAATGGTCCATATTCCACGACAGTAACAGCTGCAGCAGCTGCAGCTGCCTCCTCGTCATCCTCCAATCAACCAATAGATCATCGTTTGGTGAATGAAAACAGTGAAGCTCAACATTCATCGCCCGTGATCACTACCTCAACAAATATTAGTCCACCAGTGGCGCCAACAAGCAGCTCGTCACCTCCTTATTCATACAAGTCACCGTATGCGAATATCTATTCGAAAAGTCCACTACCAGGCCCATCATCAGTGGATCGTCATTCGTCTTGGCCAATTTCACCGGTTATGCCTAATTCAATGCCTGCCAATGCTGCCGCTATGCTAAGTTCTGTTTACGAAGCTGCACCAGACATGAATCCCTTAAAACGGAAGAAGCTCTCGTCGATCTCAAGTATGCTTATGAATCGTGATACACCGATTTTGCGCAACGTTTTGGCTCAGTCCCATTCCGCCGATTCGTCACAGCCCATGCCGTTGGTTTGTCAATCGGTTAAAAATGAGAAACCCGAGAAATCACCACAGGTTGGTGTTCCTGGGGCAAACAGCTGCAATGGGACTGATTACAGCAATGAGAAGAAATCAAAATACGATGAACCTCATTCACCCTACACTGACCGATCATACGAAGATGACGGACTTGACTGCTCACAATCATATCCTGGTGAAAATCGTATGAATTCCTTCGGTtcccagcaacaacaaaaacctgAATGGAAGCGTTACAAACAATACACACGCAGTGATATTCTCCAAGCTATCGAATGTGTCCGCAATGGCATGAGCGCCCTACAAGCATCTCGCAAATATGGTGTTCCCTCTCGTACCTTATACGATAAAGTGAAGAAACTTGGCATAACCACCGGTCGTCCTATGAATCGAACGATGAAGCGCAGCCCTAGTAATGGCGGTAGCGGTGCCGCTTTTCCTTATAGTCATGGTTATGGTCATGGTCAATCCGAACCATTACTCTCGTCTATGCATGATGGCATAGATCGGGAAAAGGATCATGAGCGCCATCTTCCGCCGACAATTCCTCACCCAGCTGCTGCCCTACTTGATCCGGCTTTCCTGCAACAAGCTTTTGAAAGCCGTGGTGGTGATATCGCCGGTCGAGAAGCTCTCCACGCTATGGCCTTAGCTGCTGCTGCGCATGCAGCTGTGAATGGTATGTCAACAAGCCCTGGTACTAACGGCACAGCACGTTCGCCTAGTCCCAGTTTTGCTATGAAATATGTCCGATCTCAGAGTCCAGTTGTAAATCAATATCGCGAAAGAGAAATGCTGATGGAAAGAGAAAAGGAACGAGAACGTGAAAGGGAACGGGAACGGGAACGTGAACGTGATCGTGAACGCGAGCACGAGCGAAGAATGATCGATCGGGAAATAATGGAAAAGGAACGTTACAAACGCGACATGGAAATGGAAATGGAAATGGAACGCGAACGTGAACGTGAACGAGAACTATCCGTGGAACATCACCTTGAAGATCATGATcgtgatgaagatgatgatcaTGTTGAGGATCTGTCAGTGACACGCAGGGATAGCTTATCACCGAACCCAAATAACCATCATGGAGTGATAGTGCCACCGATGAGTATCAAACTTCCTGCGAATAGTAGCGATAATTTCAAAGTAAATGAAAGTAGCAAACGTGAGATTATCACCGAGGATCgtgattaa
- Protein Sequence
- MGTITEGQTYCLRWNNHKSNLVEILDALIKIESYVDCTIVVDDQVQFKAHRVVLAANSPYFQSILQDVPMDHCSILFPGVQGFEMRALLEYMYTGEVNVTQSQIPKIMRIAEQLEVKGLFDMADLKEKFNRFEESGNGPYSTTVTAAAAAAASSSSSNQPIDHRLVNENSEAQHSSPVITTSTNISPPVAPTSSSSPPYSYKSPYANIYSKSPLPGPSSVDRHSSWPISPVMPNSMPANAAAMLSSVYEAAPDMNPLKRKKLSSISSMLMNRDTPILRNVLAQSHSADSSQPMPLVCQSVKNEKPEKSPQVGVPGANSCNGTDYSNEKKSKYDEPHSPYTDRSYEDDGLDCSQSYPGENRMNSFGSQQQQKPEWKRYKQYTRSDILQAIECVRNGMSALQASRKYGVPSRTLYDKVKKLGITTGRPMNRTMKRSPSNGGSGAAFPYSHGYGHGQSEPLLSSMHDGIDREKDHERHLPPTIPHPAAALLDPAFLQQAFESRGGDIAGREALHAMALAAAAHAAVNGMSTSPGTNGTARSPSPSFAMKYVRSQSPVVNQYREREMLMEREKERERERERERERERDREREHERRMIDREIMEKERYKRDMEMEMEMERERERERELSVEHHLEDHDRDEDDDHVEDLSVTRRDSLSPNPNNHHGVIVPPMSIKLPANSSDNFKVNESSKREIITEDRD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00241576;
- 90% Identity
- iTF_00313375;
- 80% Identity
- iTF_01254072;