Pjap001039.1
Basic Information
- Insect
- Popillia japonica
- Gene Symbol
- zfh1
- Assembly
- GCA_004785975.1
- Location
- SMLS01037832.1:19497-24607[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.17 1.3e+03 0.3 0.1 27 44 180 197 176 203 0.87 2 7 0.38 2.9e+03 -0.8 0.1 16 43 198 225 188 234 0.73 3 7 0.07 5.5e+02 1.6 0.2 18 45 228 255 222 259 0.85 4 7 0.0012 9.2 7.3 0.0 21 44 290 313 272 322 0.88 5 7 1.5e-05 0.11 13.4 0.1 10 43 334 368 328 373 0.81 6 7 0.0071 55 4.8 0.1 21 45 374 398 369 407 0.79 7 7 0.00063 4.9 8.1 0.1 21 47 430 456 424 462 0.87
Sequence Information
- Coding Sequence
- atggaAAGCCATCAAGATGTAACACAAATTTGTAGAACCTGTTTAACTCAAGCTAAGTTTATGCATACAATATTTGAAGTTAAACTAtcaaatgtacaaaatattcgaataattgattttattcgACGTCTTACTTCGATCAAGATTACAAAGTCAAACGATTTACCAAGTAATATTTGCATTCACTGTATTAATGATCTGTGCAAAGCTTTTGATTTTGCACAGATGTGTATTGAAAATGatactaaattaaaaacatGGATAAACCAGACTACAGTAGCTGGTGTCAATCAAACAGTGGATGTTCcagaacaagaaaaagaaaattttgttgtaaacgACTGCAAGCTTGTTATTTCTGAAGAAAGTAAGGAATATGAAGATGAAgttattatcttaaaaaataattctgatattacaaaaacattagCATCTGCAAATAAGAGTTTTGATGAATTACTCGATGTTAATGTAGGTTCCAATGAGGAAGAGTATATTGAAGAAGAACAGCATCAAATAGCTTTAGAAGAATTTGAGTGCAGTATATGTAATAAGGTATTCAAGAATAAAAATCACCTAAAGACACATAATCGAATTCACAGCAAGACACAGCATGAATATATTTGTAGTATATGTGGACAACAGTtcaattattcatatttattaaagaaGCATAGTTATAAACATGAGAGCAATAAACCGTTTCCATGTACACGTTGCGATAAAGGTTGTATTACAGCAGAGAGTTTAAGAAGGCATATGAAGACGCATGatacaaattatataaaaaaaatgcattcttGTAAAGTATGTGCAAAGGAATTTCGATATCCAAGCTTCTTGGCTGAACACATGAAGAATCATACAGGAGAACGGCCATTTCTTTGTTCAATTTGTGGCAAGGGATTTCGACAAAGTGGTGCATTGCAGTATCATGTACGATCTCATACTGGCAGTAGACCATATGAGTGCAATGTATGCAGCAAGAGTTTTAGCTCACCTGGAGTCTTAAAAATTCACATGCGTAGACATACAGATGAACGCCCATACGTTTGTGATATATGTGGAGTGGCATTTAGACAATCGACAGATATGAGAACGCACAGAAGAACTCATACTGGCGAGAAACCTGCTTTATGCACTATTTGCGGAAAAAGGTTTTCATCATCAAgtcaattgaatatacatattcgtACACATACAGGGGAGAAACCATTTCTTTGCTCTAGTTGTTCTAAATCATTTGCAACAAGAGATATGCTTATTAAACACGAAAGGATTCATACTGGTGAGAGACCATATGCATGTAAAGTTTGTTTTAAAGCGTTTAATCAGCGCAGTACTCTTAAAACTCATTTAAATACGCATAAAGCATCAAAAACGGCAACTCACCAAATTAGCGGTCAAGATAGTATGGAAGCTGGAAGGGAAAGCGATGTACTAGTCATGACGACACCACCGGTAACAATACTTTCAGCTGACGTggagtaa
- Protein Sequence
- MESHQDVTQICRTCLTQAKFMHTIFEVKLSNVQNIRIIDFIRRLTSIKITKSNDLPSNICIHCINDLCKAFDFAQMCIENDTKLKTWINQTTVAGVNQTVDVPEQEKENFVVNDCKLVISEESKEYEDEVIILKNNSDITKTLASANKSFDELLDVNVGSNEEEYIEEEQHQIALEEFECSICNKVFKNKNHLKTHNRIHSKTQHEYICSICGQQFNYSYLLKKHSYKHESNKPFPCTRCDKGCITAESLRRHMKTHDTNYIKKMHSCKVCAKEFRYPSFLAEHMKNHTGERPFLCSICGKGFRQSGALQYHVRSHTGSRPYECNVCSKSFSSPGVLKIHMRRHTDERPYVCDICGVAFRQSTDMRTHRRTHTGEKPALCTICGKRFSSSSQLNIHIRTHTGEKPFLCSSCSKSFATRDMLIKHERIHTGERPYACKVCFKAFNQRSTLKTHLNTHKASKTATHQISGQDSMEAGRESDVLVMTTPPVTILSADVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01252996;
- 90% Identity
- iTF_01252996;
- 80% Identity
- iTF_01252996;