Pjap012947.1
Basic Information
- Insect
- Popillia japonica
- Gene Symbol
- -
- Assembly
- GCA_004785975.1
- Location
- ML218143.1:647-6532[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.058 8.7 7.8 1.9 2 23 338 358 338 358 0.82 2 12 0.47 70 4.9 0.1 3 23 362 383 360 383 0.86 3 12 5e-07 7.5e-05 23.7 1.7 3 23 448 468 447 468 0.98 4 12 0.00011 0.016 16.4 0.2 1 23 474 496 474 496 0.97 5 12 4.1e-05 0.0062 17.7 1.4 1 23 502 524 502 524 0.98 6 12 1.4e-05 0.0021 19.2 1.5 1 23 530 552 530 552 0.98 7 12 0.00014 0.021 16.0 0.5 1 23 558 580 558 580 0.98 8 12 4.3e-07 6.4e-05 23.9 1.6 1 23 588 610 588 610 0.98 9 12 0.0016 0.24 12.7 0.2 1 23 616 638 616 638 0.96 10 12 1.2e-05 0.0017 19.4 1.3 1 23 644 666 644 666 0.98 11 12 0.00021 0.032 15.5 0.6 1 23 672 694 672 694 0.98 12 12 5.7e-07 8.5e-05 23.6 1.1 1 23 700 722 700 722 0.98
Sequence Information
- Coding Sequence
- ATGGCGACTGTAGATACAACACGGTATAGTGATTTGTGTAGATTATGTGGTATTAAAACCGGTGAAGTTTTGGGAATAAATATCTTTGAAGACGAAGGAATTGTTAGacaagtttataaaaaaattgaaatttgtctCCCTGTGCAGATTCATGAATCCGACGAATTACCAAAAATGATTTGTAAGCAGTGTTTAGTAAAATTAGACTTTTTTGTTGACTTTCGAGAAAAAACAATAAGGACCGAAAATTTATTAGTAGAACTCTATAAAGAATTAAGCAATGCAGGTTTACAACATGACCAAATGAAGATGAATATCATATTTGACTATCCAGAATATATAATGGTTCAACACCACCACctcataaatgaaaatatacagaataCTTCTGATATCGATTTAAATCCCTTAGAACATCGTGAAAATATGGTCATTGAACATCAAATAATACTGGGGTCGCAATCAGTGGAAATTAATGGACATTCATTAGATAATCTAGATTTAGCACAGAATGAGTTAACCAGTCAAGATATATCAAATCATAGTTTGCAAACACAGGATACTATGTTAGTTGATGATGCAAATAGGTCGCATATGATGCAGACATCAAGGTTTTCCACAACAAATTTAGAATTGATCAATCAAGAACATCAGCTTACAACTTACACCTCTGAAGGATATGAATTGAATGAAATTGGCTTAGGCGATGATACTGTTCAAGTTAAGGAAACCCAAATAATGCAACATAACCATGATCTTGAAGACCCACAAATTCTGAATGGAGCAACATTTGAAGATAAACATGATCTACAATGTGATGCTGAAGTAAAGGAATATACATTAGAAATTGAAAGTGACACTGTGATTAAGGATTTTATTAAACGTGAAGATAATAACAGTGAAAATCAATTATTGATTGATGAGAAGACGCATGCAATTCAAAATAATTCGGAAACTGCTGTTATTCATGAAATAGTTAAAACTATTTCGGAAACTACTAGTGATATAGAAACATGTAAATTATGTGGTAAAACATTTGAAAAGAGTGTATTTCAGCAACATTTTGATCAACATTTCATCAAGTGTATTGTGTGCTTAGCTGTGTTTTCTAATAAAAGTGCGCTCGACGACCATTCGAAAGAGGTACATGGTGCTACACCGGAACAAATTAAGcaaaatataaaagataGGCAGAGGAGAGATGGAAATATAACCAGTGATCAGAGTGAGAGTGATGATGATGATTCAGCTGAGCTATCAAATTTGAAAGATGAGGATGAACCGACTATAACAATAGCTGATTTGAATGGtcataaaattaagaaatggacgccaaaaatttgtaaagaaTGTGGTAAAATGTACAAAACGAATTATAAATTAACAGAACATATGCGGAAACACACTGGAgagaagccttataaatgtGGTTCTTGTGATAAAGCATTTCGCTCAAAAATAGGTTTAGCTCAACATGAAGCAAAACATACAGgtcAGTATGATTTTTCTTGTCCTGTGTGTGGAAAGGGCTTCCAATGTAAAAGTTATCTTATGGTTCATCAACGTGTACATTCAGACGTAAAACCATATCCTTGCACAACGTGTGGACAAAACTTCAAATCAAAACAGTCGTTGATGGATCACACCAATCGTCATTTAGGTGTCAAACCGTATATATGTGATATATGCGGCAGAGGATTTATTACCAAAGGTTTATGCAGGGCACATCAGAAAGTGCATACGGGACTAGATAATAGAAAGTATTCCTGCTTAGTTTGTAGTAAGAGATTTGTTTCTAAAAGCTATTTGCAAACTCATATGCGGATTCATACAGGAGAAAAACCATTTATGTGCGAGGTGTGTGGTAAAGGCTTTTTAACAAGAGTAGACCTTCGTATTCATTCCACGATGCATACTGGTGAAAAGTCATACGTTTGTGAAATGTGTGGAAAAGCATTTGCTAGAAGAGATGCACTTAGATGTCATAGACGGTCGCACACTGGGGAACGCCCGTATTCatgtgATCAGTGTGGTCAAACATTTACTCAGTTTTCACCAATGGCGATACATAAACGTCTCCATACAGGAGAGAGACCATATTCTTGCGATGAATGTGGTAAAAAATTCGTTTCCAAATCTACATTAATGGCCCATAGTAAAAAACACGATATTACGAAAAATAGGAATAATTCTTAA
- Protein Sequence
- MATVDTTRYSDLCRLCGIKTGEVLGINIFEDEGIVRQVYKKIEICLPVQIHESDELPKMICKQCLVKLDFFVDFREKTIRTENLLVELYKELSNAGLQHDQMKMNIIFDYPEYIMVQHHHLINENIQNTSDIDLNPLEHRENMVIEHQIILGSQSVEINGHSLDNLDLAQNELTSQDISNHSLQTQDTMLVDDANRSHMMQTSRFSTTNLELINQEHQLTTYTSEGYELNEIGLGDDTVQVKETQIMQHNHDLEDPQILNGATFEDKHDLQCDAEVKEYTLEIESDTVIKDFIKREDNNSENQLLIDEKTHAIQNNSETAVIHEIVKTISETTSDIETCKLCGKTFEKSVFQQHFDQHFIKCIVCLAVFSNKSALDDHSKEVHGATPEQIKQNIKDRQRRDGNITSDQSESDDDDSAELSNLKDEDEPTITIADLNGHKIKKWTPKICKECGKMYKTNYKLTEHMRKHTGEKPYKCGSCDKAFRSKIGLAQHEAKHTGQYDFSCPVCGKGFQCKSYLMVHQRVHSDVKPYPCTTCGQNFKSKQSLMDHTNRHLGVKPYICDICGRGFITKGLCRAHQKVHTGLDNRKYSCLVCSKRFVSKSYLQTHMRIHTGEKPFMCEVCGKGFLTRVDLRIHSTMHTGEKSYVCEMCGKAFARRDALRCHRRSHTGERPYSCDQCGQTFTQFSPMAIHKRLHTGERPYSCDECGKKFVSKSTLMAHSKKHDITKNRNNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00956485;
- 90% Identity
- -
- 80% Identity
- -