Mbor018152.1
Basic Information
- Insect
- Marronus borbonicus
- Gene Symbol
- -
- Assembly
- GCA_902655005.1
- Location
- LR737385.1:14366720-14375272[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.4 2.8e+02 2.4 0.4 3 23 336 355 335 355 0.84 2 12 3.5 2.9e+02 2.3 0.2 5 23 361 380 358 380 0.81 3 12 7.8e-07 6.4e-05 23.3 1.3 3 23 443 463 442 463 0.98 4 12 0.00012 0.0098 16.4 0.2 1 23 469 491 469 491 0.97 5 12 6.1e-05 0.005 17.3 0.9 1 23 497 519 497 519 0.97 6 12 1.6e-05 0.0013 19.2 1.5 1 23 525 547 525 547 0.98 7 12 0.00015 0.012 16.1 0.5 1 23 553 575 553 575 0.98 8 12 1.8e-07 1.5e-05 25.3 1.6 1 23 583 605 583 605 0.98 9 12 0.0018 0.15 12.7 0.2 1 23 611 633 611 633 0.96 10 12 1.3e-05 0.001 19.5 1.3 1 23 639 661 639 661 0.98 11 12 0.00023 0.019 15.5 0.6 1 23 667 689 667 689 0.98 12 12 6.1e-07 5e-05 23.6 1.1 1 23 695 717 695 717 0.98
Sequence Information
- Coding Sequence
- ATGGCGACTGTAGATACTACAAGATATAGTGATTTGTGTAGGCTATGTGGTATTAAAACCGGTGATGTTTTGggcataaacatttttgcagACGAAGGGATTGTtagacaaatttataaaaaaatagaaatttgtctGCCTGTGCAAattCATGAATCGGACGAATTGCCAAAAATGATTTGCAAACAGTGTTTAGTTAAACTAGATTGTTTTATTGATTTCCGCGAAAAAACCATAAGgacagaaaatttattaatagaccTTTATAAGGAATTAAGTAGTGTGGGTCTTCAGAATGATCAGATGAAGATGAACATTGTATTTGATTATCCAGAATATTTGATGGTTCAACATCACCATCTTATAAATGAAAACATGCAAAACGTTTCGGAAATCGATTTAAACCAGTTAGGACATCGTGAGAATATGGTCATCGAACATCAAATCATATTGGGTCCGCAACCAGTAGAAATTAATGGGCATTCCTTAGATAACATAGATTTAAGTCAACACGAATTAGCAAATCAAGATATCTCGAATCACAGTTTACAAACACAGGATGCAACATTTGTTGATGATAATAGCGGATCGCATATGATCCAGACATCCCGATTTACTACAACAAATTTAGAACTAATAAATCAAGAACATCAGTTAACCAGTTATACGACAGAGGGATATGAACTAAATGAAATTGACTTAAGTGACGATAGCGTACAAGTTAAGGAAACACAAATAATGCAACAAAACCACGAACTTGGaaacacacaaattttaaatgggACTTCATCTGAAAATAAGGGTGACTTACAATGTGAATCTGAGGATAAACAGTACACTTTAGAGATTGAAAGCAATAACGTAGTTAAACATGAAGACAGCAACACTGGAAATCATCTTCCAGCTGACGAAAAAAGACATGCAAACCAAAACAAATTGGAAGTTGTTACCTGTGAAACAGTTCAAAACGTTTCAGACGCTTCACCTGTTAGTGATACTGAATTGTGTAAGTTGTGTGGGAAAATAATAGACAAAAGTATGATCCAACAACATTTCGATCAACATTTTATGAAGTGCATTGTGTGTTTAGCTTTGTTCTCTAATAAAAGCGCACTTGACAACCATTCGAAGGAGGTGCATGGTGCTAGTCCAGAAGAAATCAAGAATAATATAAAGGAGAGGCTGAAGAGGGATGGCAATGTAACTAGCGATCAAAGTGAAAGTGATGACGACATTACAGAGCTATCAAATATAAGAGATGAAGATGAACCTTTCATGATAACTGAATTGAacggtaataaaattaaaaaatggactccaaaaatttgcaaagaatgtggtaaaatttacaaaacaaattataagcTAACAGAGCATATGAGGAAGCATACTGGCGAGAAACCTTATAAATGTGGTTCTTGTGATAAGGCATTTCGATCAAAAATCGGATTAGCACAACATGAAGCAAAACATACAGGTCAGTATGATTTCGCTTGCCCGGTGTGTGGGAAGGGCTTCCAATGTAAAAGTTATCTAATGGTTCACCAACGTGTTCATTCGGACGTAAAACCATATCCATGCACAACATGTGGTCagaattttaaatctaaacaatCGCTGATGGATCATACAAATCGACATTTAGGGGTTAAACCATACATATGTGATATATGCGGTAGAGGATTTATAACCAAAGGTTTATGCAGAGCGCATCAAAAAGTACATACAGGTTTAGACAATAGGAAATATTCCTGCTTAGTTTGTAATAAAAGGTTTGTTTCTAAAAGCTACTTGCAAACACATATGCGGATTCACACCGGAGAAAAACCATTTATGTGCGAGGTTTGCGGTAAGGGTTTTCTAACGAGGGTAGATCTCCGTATCCATTCCACCATGCATACTGGCGAGAAGTCATATGTATGTGAGATGTGTGGTAAAGCATTTGCTAGGAGAGATGCACTTAGGTGTCATAGGAGATCACATACCGGGGAACGTCCGTATTCATGCGATCAGTGCGGGCAAACATTTACTCAGTTTTCACCAATGGCAATTCACAAGCGTCTTCACACAGGAGAAAGACCGTATTCCTGCGAAGAATGTGGTAAAAAATTCGTTTCGAAATCTACGCTCATGGCTCATAGTAAAAAACACGATattacgaaaaaagaaaaatag
- Protein Sequence
- MATVDTTRYSDLCRLCGIKTGDVLGINIFADEGIVRQIYKKIEICLPVQIHESDELPKMICKQCLVKLDCFIDFREKTIRTENLLIDLYKELSSVGLQNDQMKMNIVFDYPEYLMVQHHHLINENMQNVSEIDLNQLGHRENMVIEHQIILGPQPVEINGHSLDNIDLSQHELANQDISNHSLQTQDATFVDDNSGSHMIQTSRFTTTNLELINQEHQLTSYTTEGYELNEIDLSDDSVQVKETQIMQQNHELGNTQILNGTSSENKGDLQCESEDKQYTLEIESNNVVKHEDSNTGNHLPADEKRHANQNKLEVVTCETVQNVSDASPVSDTELCKLCGKIIDKSMIQQHFDQHFMKCIVCLALFSNKSALDNHSKEVHGASPEEIKNNIKERLKRDGNVTSDQSESDDDITELSNIRDEDEPFMITELNGNKIKKWTPKICKECGKIYKTNYKLTEHMRKHTGEKPYKCGSCDKAFRSKIGLAQHEAKHTGQYDFACPVCGKGFQCKSYLMVHQRVHSDVKPYPCTTCGQNFKSKQSLMDHTNRHLGVKPYICDICGRGFITKGLCRAHQKVHTGLDNRKYSCLVCNKRFVSKSYLQTHMRIHTGEKPFMCEVCGKGFLTRVDLRIHSTMHTGEKSYVCEMCGKAFARRDALRCHRRSHTGERPYSCDQCGQTFTQFSPMAIHKRLHTGERPYSCEECGKKFVSKSTLMAHSKKHDITKKEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01121034; iTF_00627532; iTF_00626425; iTF_01499074; iTF_01253003;
- 90% Identity
- iTF_01121034; iTF_00627532; iTF_00626425; iTF_01499074;
- 80% Identity
- -