Basic Information

Insect: Popillia japonica
Gene Symbol: -
Assembly: GCA_004785975.1
Location: SMLS01070683.1:3315-17283[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 24 8.7e-05 0.013 16.7 0.3 2 23 15 37 14 37 0.95

2 24 0.31 46 5.5 0.6 2 23 46 68 46 68 0.96

3 24 1.7 2.6e+02 3.2 0.8 1 23 74 96 74 96 0.95

4 24 5.9e-05 0.0089 17.2 3.8 1 23 102 125 102 125 0.97

5 24 3.3e-05 0.0049 18.0 2.6 2 23 131 152 130 152 0.96

6 24 0.43 65 5.0 1.0 1 23 161 183 161 183 0.94

7 24 0.015 2.2 9.7 0.8 2 23 233 255 232 255 0.94

8 24 0.00069 0.1 13.9 1.0 2 23 261 283 261 283 0.95

9 24 6.5e-06 0.00098 20.2 1.1 2 23 291 313 290 313 0.96

10 24 6.5e-05 0.0098 17.1 0.5 1 23 319 341 319 341 0.98

11 24 0.0017 0.25 12.6 1.5 1 23 347 370 347 370 0.96

12 24 2e-05 0.003 18.7 0.3 2 23 376 397 375 397 0.96

13 24 0.022 3.3 9.1 0.0 2 23 407 428 406 428 0.96

14 24 0.072 11 7.5 0.0 1 14 433 446 433 449 0.87

15 24 0.052 7.9 7.9 1.0 2 23 470 492 470 492 0.93

16 24 0.00024 0.036 15.3 0.3 2 23 499 521 498 521 0.95

17 24 0.042 6.3 8.2 1.8 1 23 527 549 527 550 0.95

18 24 0.21 31 6.0 6.9 1 23 555 577 555 577 0.98

19 24 0.00086 0.13 13.6 2.2 1 23 586 608 586 608 0.98

20 24 0.00014 0.021 16.0 0.2 1 23 614 636 614 636 0.97

21 24 1.3e-06 0.00019 22.4 0.3 1 23 692 714 692 714 0.97

22 24 0.0044 0.66 11.3 2.2 2 23 746 768 745 768 0.92

23 24 1.1e-06 0.00017 22.6 1.8 1 23 774 796 774 796 0.97

24 24 0.0003 0.045 15.0 1.6 1 23 802 824 802 825 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	24	8.7e-05	0.013	16.7	0.3	2	23	15	37	14	37	0.95
2	24	0.31	46	5.5	0.6	2	23	46	68	46	68	0.96
3	24	1.7	2.6e+02	3.2	0.8	1	23	74	96	74	96	0.95
4	24	5.9e-05	0.0089	17.2	3.8	1	23	102	125	102	125	0.97
5	24	3.3e-05	0.0049	18.0	2.6	2	23	131	152	130	152	0.96
6	24	0.43	65	5.0	1.0	1	23	161	183	161	183	0.94
7	24	0.015	2.2	9.7	0.8	2	23	233	255	232	255	0.94
8	24	0.00069	0.1	13.9	1.0	2	23	261	283	261	283	0.95
9	24	6.5e-06	0.00098	20.2	1.1	2	23	291	313	290	313	0.96
10	24	6.5e-05	0.0098	17.1	0.5	1	23	319	341	319	341	0.98
11	24	0.0017	0.25	12.6	1.5	1	23	347	370	347	370	0.96
12	24	2e-05	0.003	18.7	0.3	2	23	376	397	375	397	0.96
13	24	0.022	3.3	9.1	0.0	2	23	407	428	406	428	0.96
14	24	0.072	11	7.5	0.0	1	14	433	446	433	449	0.87
15	24	0.052	7.9	7.9	1.0	2	23	470	492	470	492	0.93
16	24	0.00024	0.036	15.3	0.3	2	23	499	521	498	521	0.95
17	24	0.042	6.3	8.2	1.8	1	23	527	549	527	550	0.95
18	24	0.21	31	6.0	6.9	1	23	555	577	555	577	0.98
19	24	0.00086	0.13	13.6	2.2	1	23	586	608	586	608	0.98
20	24	0.00014	0.021	16.0	0.2	1	23	614	636	614	636	0.97
21	24	1.3e-06	0.00019	22.4	0.3	1	23	692	714	692	714	0.97
22	24	0.0044	0.66	11.3	2.2	2	23	746	768	745	768	0.92
23	24	1.1e-06	0.00017	22.6	1.8	1	23	774	796	774	796	0.97
24	24	0.0003	0.045	15.0	1.6	1	23	802	824	802	825	0.96

Sequence Information

Coding Sequence: ATGAAAAATTCTCACCAGACGAAGTCCAACAAAGAACctgtttattgtaatatttgcgGCAAAAGGTATTACGTGTTGGGACACTTGGAGAATCATGTACGTGAGGTACACGAAAAGGGGAAAGTTCCCGGAGCAAGGTGCGACATTTGCCTTAGATTGTTCAAAAATACAACGTACGTCGCATCGCACAAGAAGGTTGTCCATGAAAATCAAAGCGATTTCGTATGTGGTTTTTGCAATCGATTATGCTTAACTCGAGTTGCTTTAGAGAGCCATGAGATGTCACATACTAAAGattacaaattcaaatgcaaTAGATGCGATAAAGGATATTGCCGCCGCGCTCTATTGGAACATCATCAAAACGTTGTGCATAAAGGACAGTATCTCATCTGCGGAGTGtgcaataaaaagtttaaaaatcaaGCCCACTTTCAGGAGCATCAGTCAAAACACAGACCCGGATATGTTGAAGAGAAGTTCCCGTGCAAGCTGTGCGATAAAATTTTAGGTTGCGCGCGTAGCTTGTCCGTTCATACGAAATCGCATATGGGCATACAGCATATTTGTGATATTTGCGTTTTACAACAGTTTGAAACTAAATCTGCTAGTAATCTGAGATATCTCACTTTCATCATTTGTAGGTTCATTAAGGTGGAAGGTGGAGAGATGCTGGTAACCCAAAATAGACGAACGCAATGCTCCGTTTGTTATCTGCAGTTCCCAACTCGTTATCAGATGTTCAAGCACAAGGAAATCGAACATACCGATGGTACTAATACGTGCgagatttgcaataaaaattaccTTAAAAAGGAGAATCTGAAGAAGCATATAAAGGAGGTCCACGAACTGGGGCACGTCAAACAAACCTGcgaaatttgtaataaatctttCAAATCCAAACGTTACCTTCTAGCACACAAGAAGGTCATCCACGAAGGGGAAAGCGATTATGTGTGCTCGATTTGTGGGCATTTATTCATAAACAAACCTTCGCTAGAGAAGCATACCATCTCCCATACGAAAAATTATAGGTATAAATGCGATAGCTGCGATAAAGGTTATTATAGCCAAGCAGAATTGGACCACCACAAGAGCGTCCAACATGAAGGGGAGTACCTCATTTGCGCGGAATGCGGGAAAAAATTCGCCGATAAACGCTATTACAAAGCTCATCTCTTAAAGCACCAACCCGAACAcgttcaagagaaaattccgtgcgaaatttgtaataaaattctgATAGGAAGAGAGACTTACAGAGGTCATATAAAGATGCATAAACGGGAGCAACACGTGTGCGAAATTTGCGGCAAATCAGTCACCAGCGCCGAATCagCCAATGACCTTGCACGCGAATCATGCAtcgatgaaattaataaattggtCGCCCAATCACCAGGACAGTGCGTGTACTGCAAAAAGATGATCGCGGCCACTCACAATCTCCGGAGACACTTACTTTTCGCCCATTATTTAAAGACAGACTGGTCCTGCGACGTCTGCGAGAAGACCTTCCCAACCAAAATACGCTTGAGAAATCACAAGATTACTGCGCACGTGAGGAACTTTCCCTTTAAATGCGACAAATGCGGGCGCGGTTATTTGACCATAACGACGTTCAGAGAACACGTGAACATCCATCACTGCGGCCTGACGTTCACGTGCGCGCAATGCAACAAATCCTACAGATGTCGACAGTATTACAAGAAACACGTTCAAAAGCATCTAACAACCCCTACGAAGGAAGAATACGTTTGTAAGATTTGCGCGAAGGTGCTTATGCATAAGAATACTTACAGGAACCATATGAAGATACATAGCGGCAGGGATTTGCACATGTGTGATACGTGCGGTAAGGGGATGGTTAGCGCTGACAGTTTAGCGAATCATATGAGGGTGCATACCGGAGAGAAGCCgGAATTTACTAAAATTGTATTAGATGAGAAATTAGATGAGAAAAAATCCCACACTAGAAAGGGTTGGCATATGTGTGAAGCATGTGCAAAAGAAGTGTACATCACAAGTAGTTGGGCCGATCATTTGCGTTTGCACATTGAACACAAgtcttatttttgtaaaatttgtccAGAAAGCTTTAGTAGTGAAGAATCTTTGAAAACCCATATGGAGGTGCACGAGAAAGAAACAGTTCATAAGGAAAATTCACACGTAAAGGAAGAGCTTATAACTGATGATGAATTGACTGGAACTGTACCCGATCAAAAAACTCAATGCATATACTGccataaaatactaaaatattcaTACAATCTCCAAAGACACTTAACCAGCGTCCATTATAAATCCGCAAATTACGCATGCGAGATTTGCGACAGAACCTTTAGCACCAAAGCCTATTTGAGAAAGCACAAATTTACCCATTTGGGGAACTTCCCTTTCAGATGCGATAAATGCCAGAAAGGATATGTCAATATGACAGCTTTGAAAGATCACGAGAGGGTCCACCATGGCGGTTTCAGATTTAA
Protein Sequence: MKNSHQTKSNKEPVYCNICGKRYYVLGHLENHVREVHEKGKVPGARCDICLRLFKNTTYVASHKKVVHENQSDFVCGFCNRLCLTRVALESHEMSHTKDYKFKCNRCDKGYCRRALLEHHQNVVHKGQYLICGVCNKKFKNQAHFQEHQSKHRPGYVEEKFPCKLCDKILGCARSLSVHTKSHMGIQHICDICVLQQFETKSASNLRYLTFIICRFIKVEGGEMLVTQNRRTQCSVCYLQFPTRYQMFKHKEIEHTDGTNTCEICNKNYLKKENLKKHIKEVHELGHVKQTCEICNKSFKSKRYLLAHKKVIHEGESDYVCSICGHLFINKPSLEKHTISHTKNYRYKCDSCDKGYYSQAELDHHKSVQHEGEYLICAECGKKFADKRYYKAHLLKHQPEHVQEKIPCEICNKILIGRETYRGHIKMHKREQHVCEICGKSVTSAESANDLARESCIDEINKLVAQSPGQCVYCKKMIAATHNLRRHLLFAHYLKTDWSCDVCEKTFPTKIRLRNHKITAHVRNFPFKCDKCGRGYLTITTFREHVNIHHCGLTFTCAQCNKSYRCRQYYKKHVQKHLTTPTKEEYVCKICAKVLMHKNTYRNHMKIHSGRDLHMCDTCGKGMVSADSLANHMRVHTGEKPEFTKIVLDEKLDEKKSHTRKGWHMCEACAKEVYITSSWADHLRLHIEHKSYFCKICPESFSSEESLKTHMEVHEKETVHKENSHVKEELITDDELTGTVPDQKTQCIYCHKILKYSYNLQRHLTSVHYKSANYACEICDRTFSTKAYLRKHKFTHLGNFPFRCDKCQKGYVNMTALKDHERVHHGGFRF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01252989;
90% Identity: iTF_01252989;
80% Identity: iTF_01252989;