Pjap020961.1
Basic Information
- Insect
- Popillia japonica
- Gene Symbol
- -
- Assembly
- GCA_004785975.1
- Location
- SMLS01070683.1:3315-17283[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.034 67 4.4 1.5 14 26 11 23 4 38 0.80 2 19 1.8 3.5e+03 -1.1 0.2 6 28 32 56 28 63 0.67 3 19 3.3 6.4e+03 -1.9 0.1 17 24 74 81 67 82 0.82 4 19 0.41 8e+02 0.9 2.9 12 29 97 114 90 125 0.83 5 19 0.12 2.4e+02 2.6 1.7 10 29 123 142 114 151 0.77 6 19 0.47 9.3e+02 0.7 2.4 6 26 144 170 142 191 0.75 7 19 0.00013 0.26 12.1 2.9 11 43 254 283 247 284 0.88 8 19 0.14 2.7e+02 2.5 1.8 15 29 288 302 283 311 0.83 9 19 3 5.8e+03 -1.8 0.4 17 26 319 328 303 347 0.75 10 19 2.4 4.7e+03 -1.5 0.5 12 26 342 356 334 365 0.78 11 19 1.8 3.4e+03 -1.1 0.3 17 29 375 387 362 397 0.80 12 19 0.025 48 4.8 0.7 14 29 403 418 389 433 0.78 13 19 0.16 3.2e+02 2.2 0.5 14 28 430 444 421 453 0.77 14 19 0.00018 0.36 11.7 2.5 18 43 470 492 469 493 0.90 15 19 0.057 1.1e+02 3.7 2.4 9 31 580 600 569 608 0.67 16 19 0.13 2.6e+02 2.5 1.0 12 39 687 711 679 721 0.73 17 19 2.8e-08 5.5e-05 23.9 0.7 10 43 740 768 736 769 0.92 18 19 0.67 1.3e+03 0.3 0.2 18 29 775 786 770 797 0.80 19 19 1.5 2.9e+03 -0.9 0.6 17 28 802 813 785 824 0.75
Sequence Information
- Coding Sequence
- ATGAAAAATTCTCACCAGACGAAGTCCAACAAAGAACctgtttattgtaatatttgcgGCAAAAGGTATTACGTGTTGGGACACTTGGAGAATCATGTACGTGAGGTACACGAAAAGGGGAAAGTTCCCGGAGCAAGGTGCGACATTTGCCTTAGATTGTTCAAAAATACAACGTACGTCGCATCGCACAAGAAGGTTGTCCATGAAAATCAAAGCGATTTCGTATGTGGTTTTTGCAATCGATTATGCTTAACTCGAGTTGCTTTAGAGAGCCATGAGATGTCACATACTAAAGattacaaattcaaatgcaaTAGATGCGATAAAGGATATTGCCGCCGCGCTCTATTGGAACATCATCAAAACGTTGTGCATAAAGGACAGTATCTCATCTGCGGAGTGtgcaataaaaagtttaaaaatcaaGCCCACTTTCAGGAGCATCAGTCAAAACACAGACCCGGATATGTTGAAGAGAAGTTCCCGTGCAAGCTGTGCGATAAAATTTTAGGTTGCGCGCGTAGCTTGTCCGTTCATACGAAATCGCATATGGGCATACAGCATATTTGTGATATTTGCGTTTTACAACAGTTTGAAACTAAATCTGCTAGTAATCTGAGATATCTCACTTTCATCATTTGTAGGTTCATTAAGGTGGAAGGTGGAGAGATGCTGGTAACCCAAAATAGACGAACGCAATGCTCCGTTTGTTATCTGCAGTTCCCAACTCGTTATCAGATGTTCAAGCACAAGGAAATCGAACATACCGATGGTACTAATACGTGCgagatttgcaataaaaattaccTTAAAAAGGAGAATCTGAAGAAGCATATAAAGGAGGTCCACGAACTGGGGCACGTCAAACAAACCTGcgaaatttgtaataaatctttCAAATCCAAACGTTACCTTCTAGCACACAAGAAGGTCATCCACGAAGGGGAAAGCGATTATGTGTGCTCGATTTGTGGGCATTTATTCATAAACAAACCTTCGCTAGAGAAGCATACCATCTCCCATACGAAAAATTATAGGTATAAATGCGATAGCTGCGATAAAGGTTATTATAGCCAAGCAGAATTGGACCACCACAAGAGCGTCCAACATGAAGGGGAGTACCTCATTTGCGCGGAATGCGGGAAAAAATTCGCCGATAAACGCTATTACAAAGCTCATCTCTTAAAGCACCAACCCGAACAcgttcaagagaaaattccgtgcgaaatttgtaataaaattctgATAGGAAGAGAGACTTACAGAGGTCATATAAAGATGCATAAACGGGAGCAACACGTGTGCGAAATTTGCGGCAAATCAGTCACCAGCGCCGAATCagCCAATGACCTTGCACGCGAATCATGCAtcgatgaaattaataaattggtCGCCCAATCACCAGGACAGTGCGTGTACTGCAAAAAGATGATCGCGGCCACTCACAATCTCCGGAGACACTTACTTTTCGCCCATTATTTAAAGACAGACTGGTCCTGCGACGTCTGCGAGAAGACCTTCCCAACCAAAATACGCTTGAGAAATCACAAGATTACTGCGCACGTGAGGAACTTTCCCTTTAAATGCGACAAATGCGGGCGCGGTTATTTGACCATAACGACGTTCAGAGAACACGTGAACATCCATCACTGCGGCCTGACGTTCACGTGCGCGCAATGCAACAAATCCTACAGATGTCGACAGTATTACAAGAAACACGTTCAAAAGCATCTAACAACCCCTACGAAGGAAGAATACGTTTGTAAGATTTGCGCGAAGGTGCTTATGCATAAGAATACTTACAGGAACCATATGAAGATACATAGCGGCAGGGATTTGCACATGTGTGATACGTGCGGTAAGGGGATGGTTAGCGCTGACAGTTTAGCGAATCATATGAGGGTGCATACCGGAGAGAAGCCgGAATTTACTAAAATTGTATTAGATGAGAAATTAGATGAGAAAAAATCCCACACTAGAAAGGGTTGGCATATGTGTGAAGCATGTGCAAAAGAAGTGTACATCACAAGTAGTTGGGCCGATCATTTGCGTTTGCACATTGAACACAAgtcttatttttgtaaaatttgtccAGAAAGCTTTAGTAGTGAAGAATCTTTGAAAACCCATATGGAGGTGCACGAGAAAGAAACAGTTCATAAGGAAAATTCACACGTAAAGGAAGAGCTTATAACTGATGATGAATTGACTGGAACTGTACCCGATCAAAAAACTCAATGCATATACTGccataaaatactaaaatattcaTACAATCTCCAAAGACACTTAACCAGCGTCCATTATAAATCCGCAAATTACGCATGCGAGATTTGCGACAGAACCTTTAGCACCAAAGCCTATTTGAGAAAGCACAAATTTACCCATTTGGGGAACTTCCCTTTCAGATGCGATAAATGCCAGAAAGGATATGTCAATATGACAGCTTTGAAAGATCACGAGAGGGTCCACCATGGCGGTTTCAGATTTAA
- Protein Sequence
- MKNSHQTKSNKEPVYCNICGKRYYVLGHLENHVREVHEKGKVPGARCDICLRLFKNTTYVASHKKVVHENQSDFVCGFCNRLCLTRVALESHEMSHTKDYKFKCNRCDKGYCRRALLEHHQNVVHKGQYLICGVCNKKFKNQAHFQEHQSKHRPGYVEEKFPCKLCDKILGCARSLSVHTKSHMGIQHICDICVLQQFETKSASNLRYLTFIICRFIKVEGGEMLVTQNRRTQCSVCYLQFPTRYQMFKHKEIEHTDGTNTCEICNKNYLKKENLKKHIKEVHELGHVKQTCEICNKSFKSKRYLLAHKKVIHEGESDYVCSICGHLFINKPSLEKHTISHTKNYRYKCDSCDKGYYSQAELDHHKSVQHEGEYLICAECGKKFADKRYYKAHLLKHQPEHVQEKIPCEICNKILIGRETYRGHIKMHKREQHVCEICGKSVTSAESANDLARESCIDEINKLVAQSPGQCVYCKKMIAATHNLRRHLLFAHYLKTDWSCDVCEKTFPTKIRLRNHKITAHVRNFPFKCDKCGRGYLTITTFREHVNIHHCGLTFTCAQCNKSYRCRQYYKKHVQKHLTTPTKEEYVCKICAKVLMHKNTYRNHMKIHSGRDLHMCDTCGKGMVSADSLANHMRVHTGEKPEFTKIVLDEKLDEKKSHTRKGWHMCEACAKEVYITSSWADHLRLHIEHKSYFCKICPESFSSEESLKTHMEVHEKETVHKENSHVKEELITDDELTGTVPDQKTQCIYCHKILKYSYNLQRHLTSVHYKSANYACEICDRTFSTKAYLRKHKFTHLGNFPFRCDKCQKGYVNMTALKDHERVHHGGFRF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01252995;
- 90% Identity
- iTF_01252995;
- 80% Identity
- iTF_01252995;