Prid029312.1
Basic Information
- Insect
- Polyploca ridens
- Gene Symbol
- -
- Assembly
- GCA_951394255.1
- Location
- OX596272.1:8476758-8492587[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.72 56 5.3 0.4 2 23 403 424 402 424 0.90 2 10 0.43 33 6.0 2.4 1 23 431 453 431 453 0.96 3 10 0.5 38 5.8 0.7 1 19 457 475 457 479 0.74 4 10 0.00042 0.033 15.5 1.9 1 23 484 507 484 507 0.96 5 10 0.65 50 5.5 0.1 2 19 515 532 514 537 0.89 6 10 9.4 7.2e+02 1.8 2.7 3 20 547 564 545 566 0.91 7 10 0.056 4.3 8.8 0.1 2 19 576 593 575 595 0.93 8 10 0.0099 0.76 11.2 5.4 1 21 604 624 604 626 0.94 9 10 2.8e-05 0.0022 19.2 0.7 2 23 651 673 650 673 0.95 10 10 0.087 6.7 8.2 1.2 1 17 679 695 679 696 0.89
Sequence Information
- Coding Sequence
- ATGAGCACAACATCCTTGTTGCGCGTGTGTCGAGGATGTCTCGCTACAGACGCACGACTGTACGACATGCGCCAGGACCGACTTATGGAGGCCTATAACACACTACTGAGTACCGCTGTACAAGTAACAGATGACCTGCCACATTACTTATGCAGCTACTGCGCTGTACTGCTGCTCAAGTGTGATGCATTCAGAACAAAGTGCATAGATTCACTTACAATGCTTAGAAATGCTCAACAACAACATTTAAATCTTACTTcagaacatataaaaataataggtgGACCAACATACTTGATACAATCTGAATTAGAACAAATTAGATATGTAGATGAACAAAACTATTCTGATACATATTCAGATTCTGATGATTCTATAGATTGTGCTTTAACAGTCGAATCTGATTGTTCAGTTAGTGAAAACAAAttcaatgttaattttaaaGCCAAATCAATGATTAAAGATCATGAGAATGCGATAACATATAGAGATAATTATATTACAAGACTATTAAAGAAACACTTTGATAGTGAAAGGTGTTTATTAAAAGACTTTAAAGTTAACATAGATTGTGAAGCAAGTGAAGATATAAATGACATTAGAGACCACCAAAAGCGTCAGTTGGCTGAAATTATTAATCATATACAATATTCTAGTAAGACAAGTACTGAATTACTGAAAATATTAGATGGAGATTtactaaaacataataataaaacctcGAAATCAAAGTCCAATCCAACACTTAAAACTGAAAATGAAGAGACTATAGCTCAATTAGGTAAAAAGTATTTACATCAGGACATAGTACAATATAATACTAATAAATCAATATTAGAAATACATTCTGATGTTGACAGTGTAGATTTCAATGTAGAAATTCCTTGTTCGCTTCAAAATGATGAATCAAACATAGAAGTATCTCAAGATGAACTATTCGTCTTTGAAACCCAGTCTGAAACTTTAGACTCGGATGAAGATATTCCTATACCAGAACCAAAAATCAACGCgaaaaaatttgtaaaaaataagaTACGCTGTAGAAATATAAATGGAAAATTAAAAGAACGACAAATTGAGAGGGATAAAATTACCGCTGAGAGCTTTGCAAAATATAACATAGAGGTAAGACACCTAAGTAAAGAGGAACAAATTAAGGAAATTATAGATAGAAAGGAGTctgataattataaaaatgcgCAGCTCAAATGCAACATTTGCTTTAAAGGATTCCTTATTGAAGAAACATATAAGAATCACATGGTGCTACATGATGATTCCAGCGGCAAGTTCGTGTGTGAAATCTGTCAGTGTCGCTTCTTGACAAGGGACGCGTGGAGTAATCACCGATATCGCCACAAAAAAATCTTTACTTGCAAAGAGTGCGGACACACTACGAAGAATGGAGCAGTAGCAGTTGAACATTATAAATGGCACAAAGGAAAGAAGCACCCCTGCGACTATTGTGGAAAAGAATACAGAAAAAGTTCAAGTAAATACGCACACATTAAGATGAGCCACCCGACCAGTGAACAGCTGGTGCGTTGTGAGATCTGTGGAGACTCATTCAATGGACTCGCGGGACTCAAATTACATGATAATAAGTCACATAAAGAGATGTTTTCACCGGAGTGTCTATGTTCTGGTTGCGACACTCAGTTCTACTGCTCGGACGCGTTTAAGGCGCATCGTGGAACCGACGGACTGTGCGACACGATACACAAGTATTGTGTGCGCTGCGGCATGTCGTTTGAGACTGAAGAACTGCTGAAGGAACATGAGATAGAACAACGGAAACCACAGAATCAGTTTAATTGTGACGTGTGCCAAAAAGTGTTTACACATTTCACTAAGTTAAAAGTGCACCAGCTTTGCCACCAGCCGGCGTATAACAGGAACCGTAAGTCGTACATCAAGAGGAAATCAACCCTCCGCCCTACTCTTGAGCTCATGTGTGAACTGTGCGGGAAGGTCTACAAGAACAAGGCCTCTCTAAACTTGCATCATAAAATCGTACATACGAACGAGAGACCGTTCCCGTGCTCCCACTGCGCGAAGACATTCAAAACTGCAATCTGCTTAAAGGTTTCATTAGTAACGGACCATTTATGTCTGAGTGCCATATCAGATGATACTAGTGATATATCCGGTGATGATTGTTGCAGTTCAGAGTGGACTAATTTGACCCGAGTGGGGTTCCCGTCATTGAGTGTTATAAACGAACTATCAACTATAGCATTAAATATTTGA
- Protein Sequence
- MSTTSLLRVCRGCLATDARLYDMRQDRLMEAYNTLLSTAVQVTDDLPHYLCSYCAVLLLKCDAFRTKCIDSLTMLRNAQQQHLNLTSEHIKIIGGPTYLIQSELEQIRYVDEQNYSDTYSDSDDSIDCALTVESDCSVSENKFNVNFKAKSMIKDHENAITYRDNYITRLLKKHFDSERCLLKDFKVNIDCEASEDINDIRDHQKRQLAEIINHIQYSSKTSTELLKILDGDLLKHNNKTSKSKSNPTLKTENEETIAQLGKKYLHQDIVQYNTNKSILEIHSDVDSVDFNVEIPCSLQNDESNIEVSQDELFVFETQSETLDSDEDIPIPEPKINAKKFVKNKIRCRNINGKLKERQIERDKITAESFAKYNIEVRHLSKEEQIKEIIDRKESDNYKNAQLKCNICFKGFLIEETYKNHMVLHDDSSGKFVCEICQCRFLTRDAWSNHRYRHKKIFTCKECGHTTKNGAVAVEHYKWHKGKKHPCDYCGKEYRKSSSKYAHIKMSHPTSEQLVRCEICGDSFNGLAGLKLHDNKSHKEMFSPECLCSGCDTQFYCSDAFKAHRGTDGLCDTIHKYCVRCGMSFETEELLKEHEIEQRKPQNQFNCDVCQKVFTHFTKLKVHQLCHQPAYNRNRKSYIKRKSTLRPTLELMCELCGKVYKNKASLNLHHKIVHTNERPFPCSHCAKTFKTAICLKVSLVTDHLCLSAISDDTSDISGDDCCSSEWTNLTRVGFPSLSVINELSTIALNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00007402;
- 90% Identity
- -
- 80% Identity
- -