Afla003454.1
Basic Information
- Insect
- Achlya flavicornis
- Gene Symbol
- -
- Assembly
- GCA_947623365.1
- Location
- OX392496.1:7256966-7272770[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.18 12 6.9 0.8 1 23 409 431 409 431 0.91 2 12 0.031 2 9.4 2.7 1 23 438 460 438 460 0.98 3 12 0.72 46 5.1 0.3 1 12 464 475 464 486 0.87 4 12 0.0023 0.15 13.0 0.9 3 23 497 518 496 518 0.96 5 12 0.7 45 5.1 0.1 2 19 526 543 525 548 0.88 6 12 8.3 5.3e+02 1.7 2.7 3 20 558 575 556 577 0.91 7 12 0.05 3.2 8.7 0.1 2 19 587 604 586 606 0.93 8 12 1e-05 0.00067 20.3 3.3 1 23 615 637 615 637 0.99 9 12 0.0003 0.019 15.7 0.4 2 23 657 679 656 679 0.93 10 12 7.5e-07 4.8e-05 23.9 3.2 1 23 685 707 685 707 0.98 11 12 0.00053 0.034 14.9 1.0 1 23 713 735 713 735 0.97 12 12 3.5e-06 0.00022 21.8 0.2 1 23 741 764 741 764 0.98
Sequence Information
- Coding Sequence
- ATGAGCATAACATCCTCGTTGCGAGTGTGTCGCGGATGTCTCGCTACAGACGCACGACTGTACGACATGCGCCTGAACCGACTGCTGGAGGCCTATAACACACTACTGGGTACCGGTACTGTGCAAGTAACAGATGACCTGCCACATTACTTATGCAGCTACTGCGCTGTACTGCTGCTCAAGTGCGACACGTTCAGAACAAAGTGCATAGACACACTAATAGTGCTTAGAAATGCTAAACAACAACATTTAAATCTTACTTCAGAACATATAAAAATAATAGACGGAACATACTTTACACAATCTGAATTAGAACATATTAGTTATGTAGATGATACTCCTGAACAAAACTATTCTGATACATATTCAGATACTGATGATTCTATAGATTATACTTTAACAGCCGAATCTGATTGTTCAGTTAGTAAAAACAAAATAAATGTTAATTTTAAAGCCATATCAAAGATCAAAGAACATGACTATGCGATAACATATAAAGATATTTATATTACAAGACTACTAAAGAAACACTTTGATAGTGAAAGATATTTATTAAAAGACTTTAAAGTTAACATAGATTGTGAAGCAAGTGAAGATATAAATCACATTAGAGACCATCAAATGCATCAGTTGTCTGAAATTATTAATCATATACAATATTCTAGTGAGACAAGTACTGAATTACTAACAATATTAGATGAAGAAATACTAAAATATAATAATAAAACCTTGAAATCAAAGTCCAATCCAACACTTAAAACTGAAAATGAAGTGGCGGTAGCTCAAGTAAGTAAAGAGCATTTACATCAGGACATAGTACAAGATAATACTAATAAATCAATATTAGAAATACATTCTGATGTTGACAGTGTAGATATAAATGCAGAAATTCCTTGTTTGCCTCAAAATGACGTATCAAACATAGAAGTATCTCAAGATGAACTATTCGTCTTTGAAACCCAGTATGATGAAATAAACGAAACCTCAGACTCGGAAGAAGATATTCCTATACCAGACCTTAAAATCAACGCGAAAAAATGTGTACCAAATAAGATATGCTGTAAAAATATCAATGGAAAATTAAAAAAACGACTAATTGAGAGGGATAAGGTTACCGCTGAGAAATTTGCAAAATATAACATAGAGGTAAGACACCTAAGTAAAGAGGAACAAATTAAGGAAATTAATGATAGAAAGGAGTCTGATAATTATAAAAATGGGCAGTTTAAATGCAACATTTGCTTTAAAGGATTCCTTATTGAAGAAACATATAAGAATCACATGGTGCTACATGATGATTCCAGCGGCAAGTTCGTGTGTGAAATCTGTCAGTGTCGCTTCTTGACTAAGAACGCGTGGAGTAATCACCAAAGGCGCCACCGTAAAATATTTACTTGCAAAGAATGCGGACACACTACGAAGGATGGAGTAGTAGCAGTTGAACACTCTAAATGGCACAAAGGAAAGACAGGAAAGACACTGGGAAATTGCGAGTATTGTGGAAAAGAATTCCGAAATAAATTAAGTAAATACGGACATATGAAGATGTGGCACCCGACCAGTGAACAACTGGTACGTTGTGAGATCTGTGGAGACTCATTCAATGGACTGGCAGGACTCAAATATCATGATAATAGGTCACATAAAGAGATGTACTCACCGGAGTGTCTATGTTCTGGTTGCGACACTCAGTTCTACTGCTCGGACGCGTTTAAGGCGCATCGAGGAACCGACGGACTGTGCGACACGCTACACAAGTATTGTGTGCGCTGCGGTATGTCGTTTGAGACTGAAGAACTACTTAAGGAACATGAGATAGAACAACGGAAACCACAGAATCATTTTAAATGTGACGTGTGCCAAAAAGTGTTTGCAAATTTCACTTATTTCAAAACGCACCAGCGAACTCATTTGCCGTATACCAGGTACCGCAAATCGTTGGACAAGAGGAAACCAACCCTCCGGCTCATGTGTGAACTGTGCGGGAAGGTCTCCAAGAACAAGGGCGCCCTACAGGCGCATCATCTCAACATGCATTCGACCGAGAGACCGTTCTCGTGCTCACACTGCACGAAGACATTCAAAACTGCCGCTAATTTGAAGGTCCACACGCGCGTCCATACTGGAGAACGGCCCTTCCAGTGCGAGCGCTGCCCAAAAGCGTTCCAGCTTCGAACGAATCTCGATAGACATCAATTTGTACACACAGGGGAGCGTCCATACTCGTGCGACTTCTGTGGGAAAACCTTCGCCGATGTGTCAAACATTAAGATTCACATCAAAACTGTCCACATGAAGGAGCCCACGCCGCCCCGGGTGCGGCGCGGGCGGACTCGCCGGAACAAGAATACACAGTGA
- Protein Sequence
- MSITSSLRVCRGCLATDARLYDMRLNRLLEAYNTLLGTGTVQVTDDLPHYLCSYCAVLLLKCDTFRTKCIDTLIVLRNAKQQHLNLTSEHIKIIDGTYFTQSELEHISYVDDTPEQNYSDTYSDTDDSIDYTLTAESDCSVSKNKINVNFKAISKIKEHDYAITYKDIYITRLLKKHFDSERYLLKDFKVNIDCEASEDINHIRDHQMHQLSEIINHIQYSSETSTELLTILDEEILKYNNKTLKSKSNPTLKTENEVAVAQVSKEHLHQDIVQDNTNKSILEIHSDVDSVDINAEIPCLPQNDVSNIEVSQDELFVFETQYDEINETSDSEEDIPIPDLKINAKKCVPNKICCKNINGKLKKRLIERDKVTAEKFAKYNIEVRHLSKEEQIKEINDRKESDNYKNGQFKCNICFKGFLIEETYKNHMVLHDDSSGKFVCEICQCRFLTKNAWSNHQRRHRKIFTCKECGHTTKDGVVAVEHSKWHKGKTGKTLGNCEYCGKEFRNKLSKYGHMKMWHPTSEQLVRCEICGDSFNGLAGLKYHDNRSHKEMYSPECLCSGCDTQFYCSDAFKAHRGTDGLCDTLHKYCVRCGMSFETEELLKEHEIEQRKPQNHFKCDVCQKVFANFTYFKTHQRTHLPYTRYRKSLDKRKPTLRLMCELCGKVSKNKGALQAHHLNMHSTERPFSCSHCTKTFKTAANLKVHTRVHTGERPFQCERCPKAFQLRTNLDRHQFVHTGERPYSCDFCGKTFADVSNIKIHIKTVHMKEPTPPRVRRGRTRRNKNTQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01252318;
- 90% Identity
- -
- 80% Identity
- -