Prid026677.1
Basic Information
- Insect
- Polyploca ridens
- Gene Symbol
- -
- Assembly
- GCA_951394255.1
- Location
- OX596269.1:1026364-1028496[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 2.6e-05 0.002 19.3 0.7 2 23 104 125 103 125 0.97 2 18 0.00075 0.058 14.7 2.4 3 23 157 178 155 178 0.95 3 18 3.8 3e+02 3.0 0.6 1 8 206 213 206 214 0.90 4 18 0.0013 0.1 13.9 2.5 2 23 237 259 237 259 0.97 5 18 0.0076 0.59 11.5 2.3 1 23 265 288 265 288 0.94 6 18 0.47 37 5.9 0.2 1 20 292 311 292 313 0.89 7 18 0.0028 0.21 12.9 2.0 1 23 321 344 321 344 0.98 8 18 3 2.4e+02 3.4 0.2 1 23 349 372 349 372 0.89 9 18 0.00014 0.011 17.0 0.2 2 23 385 406 384 406 0.98 10 18 0.00048 0.037 15.3 0.9 1 23 412 434 412 434 0.98 11 18 0.11 8.5 7.9 0.1 2 23 440 460 439 460 0.95 12 18 0.00089 0.068 14.5 0.4 2 23 468 489 467 489 0.97 13 18 0.097 7.5 8.1 0.2 2 23 494 514 493 514 0.94 14 18 6 4.7e+02 2.4 2.8 2 23 533 554 532 555 0.92 15 18 5.3e-05 0.0041 18.3 3.1 1 23 561 583 561 583 0.98 16 18 1.8e-05 0.0014 19.8 1.1 3 23 591 611 589 611 0.96 17 18 0.00056 0.044 15.1 0.6 1 23 617 640 617 640 0.95 18 18 1.3 1e+02 4.5 0.4 2 23 646 668 646 668 0.94
Sequence Information
- Coding Sequence
- ATGAACAACTATATTAATGACTTATACAATAAGTTGGACAATATAAACAATCATTTGGAACTTACCACAATGGCGGACAACTCTAATATTGTTATCATGTTAGGAATTTCTGAAATAGATACTCAAGAAAAGTTAGAAAGAGATGCAAAGAAAACAAGTAATAAGActagtgtaaataataatacattaaaaacaaaTCGGAAAGAAGCAATAGAAGACACATATGAATGCGTTGAATGCCATATTTTACTACCCACTTTTCAAGCTTGGAAAAAACATGACAATAAATATCATGGAAATGAAAATCTAGAATGCAAAATCTGTTTAAAATCTTTCAAAACTCAACAGTATCTTGTAGCACATTATAAAATACATGCAAAAGTGATATGCAAGATTTGTCACCAACTTATATCTGATACAGAATTAATTGACCATTTAAAGGAATATCATAAAGAAACAGCGCATTTATGTGATATTTGTAATGAGGCATATTATTCTTCAAAAGCACTGGAGACACATATGAAAATGTGCCACGAAAATATAATCGCAAGCAATCAATGTGTTATGTGTCTCAAAAGTTTTGAAGGTGATGAGTTAAAATCACATAATTGTAAATTCAAATGTCCAGAATGCTCTAAAATGCCTTGTATCCATTATAGGTATTTAATGTTTTATAAAGAGCAAATGCATAATCGTGCGAGCAAAGCAAAGTGCTTGGACTGCGATTATACGTGTCGTAAAAAGAATAACTTGTTAGCACATGTAAATCGAGAACATTTGGATCAACATCAGTATACTTGCGACAAATGTGGTCAGCAGTTTTATTCAAAAACCGTAATGAAATCTCACATATATCAATTTCATTCAGATACTTTTATGTGTGAATTTTGTGACGCCAAATTCTTTAACAGTCAAGCCTATGACAGCCATGTTATAAGCTGTGAATTGATCACAAGAGAATTTAAATGTGATGAATGTACAGCAAATTTTGATAGCACAAAACAGTTGATGTTACACAAAAGACGAAAGCATACTAAGGTAATATATCCATGCGGCTTATGCAATAAGGAATTGCTGACGGAATCTAAGAGAAAAGAACACATGGTCAGAGTTCACAGTGGTAtccaaatcaaaaatcaaaggTTGAATGGTAAATGTGTTATTTGTGAAGATAAATTTGATACTAAAGGTGAATTGGTTCGACATATGCGAACACATGGACCTAAAGTTAAATATCCTTGTAAAATATGCAATACAGAGTATGAGAATCTCAGAAAACTTAGAGCTCATAGTAGAAAACACGTTGGCCCTTTCGTAGTTTGCGAAATATGTGGGAAAGAGATGAGACAAGTTTTACTTGATAAGCACATGTCCAATCACGCTTCAATGGGCGAAACAGTCACATGTGATACATGCGGAAAATCTTTCCTAAGTATAGCACAGTTAAAATACCACCAGAAAGTCCATTTGGATAGTGTCCCATGTCCTAAATGTAAGAAACTAATCAACCCCGCAAAGTTAAGAAGACACTGGCGAGAACATATGATGGAAGAAGACCCGAAattaaaagaaagtaaaaaacaGAAGCCGAATCTAAAATGCGAGCTGTGTGACTACACTACATGGAATAACATACTATTGGAATGTCATATGAATAGAcaccatttaaaaataaagccATATATTTGTCATATATGCAGTAAAGATTTCATTGGGAAACATTTGCTGAAGAAACATATAGAAACTCATACTGATGAAAAGAGTGTTAACTGTATGATTTGTGGAAAGAGTTTCGCAAATTCTGCATGTTTGAAGATGCATTTACGATTGCATACAGGAGAGACGCCGTATCCGTGTGATATATGCGGACAAAGCTTTAGGTCTTCAAGCATCATGAATGTGCATAAACAGAAAAAACATTCGGAACGAAGTAATGTCTGCCCTCTTTGTCCCAGCAAGTTTCATACAATAAGAGATATAAGGAGCCATGTAATAAAAGTTCATTGGAAAcagaaaaataagaaatttaATCCGCGAGAACTGAAAGGGTTAAATGAAGAACATTACCATTTATTTCATGACGGTAGAAGAATTAAAGTTGATGAGGAAGAAGTGGAATTTTTTAATCGTTAA
- Protein Sequence
- MNNYINDLYNKLDNINNHLELTTMADNSNIVIMLGISEIDTQEKLERDAKKTSNKTSVNNNTLKTNRKEAIEDTYECVECHILLPTFQAWKKHDNKYHGNENLECKICLKSFKTQQYLVAHYKIHAKVICKICHQLISDTELIDHLKEYHKETAHLCDICNEAYYSSKALETHMKMCHENIIASNQCVMCLKSFEGDELKSHNCKFKCPECSKMPCIHYRYLMFYKEQMHNRASKAKCLDCDYTCRKKNNLLAHVNREHLDQHQYTCDKCGQQFYSKTVMKSHIYQFHSDTFMCEFCDAKFFNSQAYDSHVISCELITREFKCDECTANFDSTKQLMLHKRRKHTKVIYPCGLCNKELLTESKRKEHMVRVHSGIQIKNQRLNGKCVICEDKFDTKGELVRHMRTHGPKVKYPCKICNTEYENLRKLRAHSRKHVGPFVVCEICGKEMRQVLLDKHMSNHASMGETVTCDTCGKSFLSIAQLKYHQKVHLDSVPCPKCKKLINPAKLRRHWREHMMEEDPKLKESKKQKPNLKCELCDYTTWNNILLECHMNRHHLKIKPYICHICSKDFIGKHLLKKHIETHTDEKSVNCMICGKSFANSACLKMHLRLHTGETPYPCDICGQSFRSSSIMNVHKQKKHSERSNVCPLCPSKFHTIRDIRSHVIKVHWKQKNKKFNPRELKGLNEEHYHLFHDGRRIKVDEEEVEFFNR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00007388;
- 90% Identity
- iTF_00007388;
- 80% Identity
- -