Afla014476.1
Basic Information
- Insect
- Achlya flavicornis
- Gene Symbol
- -
- Assembly
- GCA_947623365.1
- Location
- OX392493.1:8630689-8634155[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2.2 1.4e+02 3.6 0.1 5 17 37 49 35 50 0.88 2 19 6.4 4.1e+02 2.1 1.0 1 23 187 210 187 210 0.93 3 19 2.7e-05 0.0017 19.0 0.8 2 23 216 237 215 237 0.97 4 19 0.0032 0.2 12.5 0.7 3 23 269 290 267 290 0.94 5 19 3.8 2.4e+02 2.8 0.6 1 8 318 325 318 326 0.90 6 19 0.039 2.5 9.1 2.0 2 23 349 371 349 371 0.96 7 19 0.00065 0.042 14.7 1.5 1 23 377 400 377 400 0.94 8 19 0.36 23 6.0 0.1 1 20 404 423 404 425 0.89 9 19 8.2 5.2e+02 1.8 0.2 1 23 461 484 461 484 0.88 10 19 0.00035 0.022 15.5 0.1 2 23 496 517 495 517 0.97 11 19 0.00047 0.03 15.1 0.9 1 23 523 545 523 545 0.98 12 19 1 67 4.6 0.1 2 23 551 571 550 571 0.93 13 19 6.3e-06 0.0004 21.0 0.4 2 23 579 600 578 600 0.97 14 19 0.11 7.2 7.6 0.1 2 23 605 625 604 625 0.94 15 19 6 3.9e+02 2.2 2.8 2 23 644 665 643 666 0.92 16 19 5.3e-05 0.0034 18.1 3.1 1 23 672 694 672 694 0.98 17 19 2.9e-05 0.0019 18.9 1.6 3 23 702 722 700 722 0.96 18 19 0.0012 0.079 13.8 0.7 1 23 728 751 728 751 0.95 19 19 0.45 29 5.7 0.5 2 23 757 779 757 779 0.94
Sequence Information
- Coding Sequence
- ATGGAAGAACTTGAACTAAATGAACACATATCTAAAAACTATTCTAAACCTATCAACAATCTAGGAGATATAAAACATAAAATAAATAATGTAATAAATTCAAAGCAGTATTGTGGAATATGTTTTGAAGATAGTGACAACATGACTTCAATAGATGAAGACCTGGAAATAACAGTTCAGCAATGGATACGAAGGGTTTCGTTGAACGATATTATTTACAAAGTTTTTTCTGATAATCCACACATCTTAGCCAGCAACAGTATCTGCAACAACTGTATGTGTAAGTTAATACAATCTTACATTTTCATACTGAATACTGAAAATGTATCAAGAATTATGAACAACCTTATTAATAACTTATACCATAAGTTGGACAATATAAACAATCATTTGGAAGTCACCACAACGGCAGACAACTCTAATATTGTTATCATGTTAGGAATTTCTGAAATAGATACTCCAGAAAAGTTAGAAAGAGATGTAAAGAAAATAAGTAATAAGACTACTGTAAATAATATTAAATTAAAAACAAATCGGAAAGAAGCAATTGAAAACACATATGAATGTGTTGAATGCCATATTTTACTACCCACTTTTCAAGCTTGGAAAAAACATAACAATAAATATCACGGAAATGAAAATCTAGAATGCAAAATCTGTTTAAAATCCTTCAAAACTCAACAGTATCTTCTAGCACATTATAAAATACATGCCAAAGTGATATGCAAGATTTGTCACCAACTTATATCTGATACAGAATTAATTGACCATTTAAAAGAATATCATAAAGAAACAGCACATTTATGTGATATTTGTAATGAGGCGTATTATACTTCAAATGCACTGGAGACACATAAGAAAATCAGCCACGAAAATATAATCGCAAGCAATCAATGTGTTATGTGCCTCAAAAGTTTTAAAGGTGATGGGTTAAAATCACATAATTGTAAATTCAAATGTCCAGAATGTTCTAAAATGCCTTGTATCCATTACAGGTATTTAATGTTTTACAGAGAGCAAATATTTAATCGTGCGAGCAAAGCAAAGTGCTTGGACTGCGATTTTGCCTGTCGTAAAAAGAATAACTTGTTAGGACATGTAAATCGAGAACATTTGGATCATCACGAGTATACTTGCGACAAATGTGGTCAGCAGTTTTATTCTAAAACCGTATTGAAATCTCACATATATCAATTGCATTCAGACACTTTTATGTGTGAATTTTGTGGCGCCAAATTCTATAGCACAGAAGCCTATGACAGTCATGTTATAAGCTGTGAATTGATCACAAGAGAATTAACATGTGATGAATTTACAGCAAATTTTGATAGCACAGCACAATTGGTGTTGCACAAAAGACGAAAGCATACCAAGGAAATATATCCATGTGGTTTATGCAGTAAGGAATTGCTGACGGAATCTAAGAGAAAAGAACACATGGTCAAAGTTCACAGTATCCAAATCAAAAATCAAAGGTTGAATGTTAAATGTGTTGTTTGTGAAGATGAATTTGATACTAAAGGTGATTTGGTTCGACATATGCGTACGCATGGACCTAAAGTTAAATATCCTTGTAAAATATGCAATACGGAGTATGAGAATCTCAGAAAACTTAGAGCTCATAGTAGAAAACACGTTGGCCCTTTTGTAGTGTGCGAAATATGTGGGATAGAGATGAGACAAGTTTTACTTGATAAGCACATGTCCAACCACGCTTCAATGGGCGAATCAGTCACTTGTGATAAATGCGGAAAATCTTTCATAAATATAGCACAGTTAAAATACCACCAGAAAGTCCATTTGGATTGTGTCCCATGTCCTAAATGTAAGAAACTAATCAACCCAGCAAAGTTAAGAAGACATTGGCGAGGACATATGATGGAAGACGACCCGAAATTAAAAGAAAGTAAAAAACAGAAGCCGAATCTAAAATGCGAGCTGTGCGACTATACCACATGGAATAACATACTATTGGAATGTCATATGAATAGACACCATTTAAAAATAAAGCCATATATTTGTCATATATGCAGTAAAGATTTCATTGGGAAACATTTGCTGAAGAAACATATAGAAACACATACTGATGATAAGAGTGTTAACTGTATGATTTGTGGAAAGAGCTTCGCCAATTCTACATGTTTGAGGATGCATTTACGACTGCATACAGGAGAGACGCCGTATCCGTGTGATATATGCGGACAAAGGTTTAGGTCTTCAAGCATCATGAATGTTCATAAACAGAAGAAACATTCGGAACGAAGTAATGTCTGCCCACTTTGTCCCAGCAAGTTTCATACAATAAGAGATATGAGGAGCCATGTAATAAAAGTCCACTGGAAACAGAAAAATAAGAAATTTAATCCGCGAGAACTGAAAGGGTTAAATGAAGAACATTACCATTTATTTCATGACGGTAGAAGAATTAAAGTCGATGAGAAAGAAGTTGAATTATTTAATTGTACAAATTAA
- Protein Sequence
- MEELELNEHISKNYSKPINNLGDIKHKINNVINSKQYCGICFEDSDNMTSIDEDLEITVQQWIRRVSLNDIIYKVFSDNPHILASNSICNNCMCKLIQSYIFILNTENVSRIMNNLINNLYHKLDNINNHLEVTTTADNSNIVIMLGISEIDTPEKLERDVKKISNKTTVNNIKLKTNRKEAIENTYECVECHILLPTFQAWKKHNNKYHGNENLECKICLKSFKTQQYLLAHYKIHAKVICKICHQLISDTELIDHLKEYHKETAHLCDICNEAYYTSNALETHKKISHENIIASNQCVMCLKSFKGDGLKSHNCKFKCPECSKMPCIHYRYLMFYREQIFNRASKAKCLDCDFACRKKNNLLGHVNREHLDHHEYTCDKCGQQFYSKTVLKSHIYQLHSDTFMCEFCGAKFYSTEAYDSHVISCELITRELTCDEFTANFDSTAQLVLHKRRKHTKEIYPCGLCSKELLTESKRKEHMVKVHSIQIKNQRLNVKCVVCEDEFDTKGDLVRHMRTHGPKVKYPCKICNTEYENLRKLRAHSRKHVGPFVVCEICGIEMRQVLLDKHMSNHASMGESVTCDKCGKSFINIAQLKYHQKVHLDCVPCPKCKKLINPAKLRRHWRGHMMEDDPKLKESKKQKPNLKCELCDYTTWNNILLECHMNRHHLKIKPYICHICSKDFIGKHLLKKHIETHTDDKSVNCMICGKSFANSTCLRMHLRLHTGETPYPCDICGQRFRSSSIMNVHKQKKHSERSNVCPLCPSKFHTIRDMRSHVIKVHWKQKNKKFNPRELKGLNEEHYHLFHDGRRIKVDEKEVELFNCTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01252082;
- 90% Identity
- iTF_01252082;
- 80% Identity
- -