Basic Information

Insect: Polyploca ridens
Gene Symbol: -
Assembly: GCA_951394255.1
Location: OX596243.1:13361456-13379465[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 5.8 4.5e+02 2.5 0.1 1 23 84 107 84 107 0.88

2 19 0.23 18 6.9 0.1 3 23 112 132 110 132 0.96

3 19 0.15 12 7.4 0.3 2 20 136 154 135 155 0.94

4 19 0.048 3.7 9.0 1.2 2 23 389 411 388 411 0.96

5 19 0.042 3.2 9.2 0.2 1 20 419 438 419 440 0.94

6 19 0.064 4.9 8.6 0.9 3 23 451 471 450 471 0.96

7 19 1.1 87 4.7 0.9 1 23 487 510 487 510 0.88

8 19 0.049 3.8 9.0 2.8 1 23 519 542 519 543 0.94

9 19 0.037 2.8 9.4 0.5 2 23 620 642 619 642 0.91

10 19 2.5 1.9e+02 3.6 1.2 1 23 647 670 647 670 0.93

11 19 6e-05 0.0046 18.2 1.9 1 23 676 698 676 698 0.96

12 19 1.2e-06 9.3e-05 23.5 2.3 1 23 705 727 705 727 0.99

13 19 0.00011 0.0085 17.3 2.3 1 23 732 754 732 754 0.96

14 19 0.0013 0.099 14.0 2.2 1 23 760 782 760 782 0.97

15 19 2.3e-06 0.00017 22.6 1.4 1 23 788 810 788 810 0.98

16 19 0.00029 0.023 16.0 3.3 2 23 817 838 817 838 0.98

17 19 3.5e-05 0.0027 18.9 0.8 2 23 846 868 845 868 0.97

18 19 0.00037 0.029 15.7 0.6 1 23 873 895 873 895 0.97

19 19 0.00017 0.013 16.7 1.9 1 23 901 924 901 924 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	5.8	4.5e+02	2.5	0.1	1	23	84	107	84	107	0.88
2	19	0.23	18	6.9	0.1	3	23	112	132	110	132	0.96
3	19	0.15	12	7.4	0.3	2	20	136	154	135	155	0.94
4	19	0.048	3.7	9.0	1.2	2	23	389	411	388	411	0.96
5	19	0.042	3.2	9.2	0.2	1	20	419	438	419	440	0.94
6	19	0.064	4.9	8.6	0.9	3	23	451	471	450	471	0.96
7	19	1.1	87	4.7	0.9	1	23	487	510	487	510	0.88
8	19	0.049	3.8	9.0	2.8	1	23	519	542	519	543	0.94
9	19	0.037	2.8	9.4	0.5	2	23	620	642	619	642	0.91
10	19	2.5	1.9e+02	3.6	1.2	1	23	647	670	647	670	0.93
11	19	6e-05	0.0046	18.2	1.9	1	23	676	698	676	698	0.96
12	19	1.2e-06	9.3e-05	23.5	2.3	1	23	705	727	705	727	0.99
13	19	0.00011	0.0085	17.3	2.3	1	23	732	754	732	754	0.96
14	19	0.0013	0.099	14.0	2.2	1	23	760	782	760	782	0.97
15	19	2.3e-06	0.00017	22.6	1.4	1	23	788	810	788	810	0.98
16	19	0.00029	0.023	16.0	3.3	2	23	817	838	817	838	0.98
17	19	3.5e-05	0.0027	18.9	0.8	2	23	846	868	845	868	0.97
18	19	0.00037	0.029	15.7	0.6	1	23	873	895	873	895	0.97
19	19	0.00017	0.013	16.7	1.9	1	23	901	924	901	924	0.98

Sequence Information

Coding Sequence: ATGTCTTCTGATGATTCTGATGATGAACCACTATCTGTTATAGCGGcttccaaaaatattaattcaggAGCATCTATAGAAAGTACGACCGAAAATGAAGAAGTCAAAACAATtaagaaaagaaagaagaaagttCCTCCGGTTATAACAAAATTGCCCAGGAGGGCTAAAAGGGTTTTAACTCCACCAATTATTGAGAGACCTGCCGATGTATGGCTATATCTAAAAGATTTGAAGCCGACCGGCCCATATAATTGCTTACTATGCCCAGAATGGTTCATAAACaaatctaaaattattattcacTATGTTTTGAACCACAAGAAAGATTTTTGTGGGATTTGCAGATACTTTGTTCCTGATAGAGATGCCTGGTGGGCTCACATGAAATTCCACACTCCATGGCCATGCTCACAATGTGTAGAAAACTTTGATACGGAAACAACCTTGCGTCATCATCTCAGTTGCACCCACAAATTAGTACACTGTCGTCTCTGCCACTTCCGCGTACCAGATGATGACCAATACAACACACATCTCTTCCAAAAACATAATGTTACAAATGTTTCAAGTAAagatgaagaaatattttggGAACAAGATTATGAAGGCAGTACTAAATTCCTCTGTCTACTCTGTTccaaatcaaataatatatcTCGTACATTCTTCAATCACTATATGGGATACCACCATTTCACACTCAAATGCTTCACCAGAATTATCTGTGGGAGAGATCCACCATTTACAGTTATTGGTGCTGAAGTAAGCACAGAGTTTGTTGATGGTTTAAAAGAAAGTCCACGGTTTGGGTATGTGGACTTAGATCAAAAGCAACCAGAGGGTGATCAAGAGTCGAATCACAGCACAAACAATGAAACAAACACATTCCTTGATGTTCTTGTACCTGAGGTAAAGACGGAAAGTACCAGTGATCCAGATGAACCAAAACATGATGATACAACAAAAAATGATGAAAATGATGTTACAAAAACATATAAAGGTGATGAAGATTTTGATGTAACACTAATGGAACTGATACTGATGCAATTGAGTTATTTTGATTACATAAGCCAGACTTTAACACATATAAATTCGCATACAGTTCCTCAAAACTCTGATATTGTTTATGAAGATGTTGATTCCGATTTGAAAGTTGATTTGTATTGTTCTTTGTGCCAAACAAAGTATGAAACCTTACAAACGTTTTCAGTGCATATGAATAAAATGCACTGTGTCAAATCAGTGCCAATATTCTCATGTAGAGTTTGCGCAACTTCATTCGACAGTCGGAGTGAACTGGACACTCACACGCTTCAAGAGATGAAAGAATTTGACGATTTGTGGCTGTGTCAGTTTTGTGACAAAGAGTTTGATAATAGAGAATCAACAAGAGAGCACTTAACGGAACACTATGATGAAATGGAGTTTGACAATTGCTTCAGTCCACATTTAGGCTTTAAATGTAAATATTGCCCGACTTTATTCTGGAATGAAACGGATAGACAGACTCATCAAGTGAGGGTGCACTTTAGTAAGCACAAGGAAcagtattataaatgtgaaagctGTAATGAAATTTATAGTGATAAGGTTTGGTACATCCATCATTACCTTGAGAAGCATCATGAAGAGAATGACAAGATTCCTCTATATCTTCTGAAATGTTGTCTATGCTGCTTGGTGATGGAAACAGTAGAAGAAATGAGGGATCACTTCAAAAGCCACCACCCTGAAGCTATGAAGGTTTTCTGTTCACTGGATAGTTGCAAGTACAAACCGTTAAGTCATAGGAAATCGTTCAAGATGCATTTGAGATTGATCCATAATCCATCTGCACGCTCGGACCGTTCGGTAACGTGTACAGTTTGCGGGCGCGAATTCACCAGCTTGCGGGCGTGTAGCGCTCACATGGCTCAAGTGCATGTACCCGGAAAATTTAAGTGCAAACTGTGTAGGGAAACGTTGCAGACTATGGACGAAAGAAAACTCCACTATCTAATCCAACACCCGGGTCGTCATCCGTTCGAGTGCACCGAGTGCGGCAAATCCTTCCAGTACAAGTCATCTCTATACATGCACAAACAAGACCACGTGCCTAATAAACAGAGCTACACATGTAGCTTTTGTGGGAAGGTGTTTAAGAAGAAGGACTCGTTCCGCGAGCACATGCAGATCCACGAGGGCCCGCGTCACGCGTGCTCGTACTGCCCGATGCGGTTCGTGCAGCGCTCCAACATGCTGCGCCACGAGCGCCGACACACCGGCGAGCGCCCCTACGCCTGCCCCCACTGTCCGCGCACCTTCGCCGATAAGGGCGCCTGTACCTCGCATTCTAGGACTCACTCGAAAGAAACATCATACGCTTGCCTGTACTGCGGTCAGACATTCGTACAGAAATCCAAGTTGACTTATCACATTCGAAAACATACGGGAGAGAATTTGGAAACATGTTCAATATGTTCAAAGTTGTTCACGAGCGCTTGTTCTCTACGGGAACACATGAAGACTCACAACGATAAGAAACAAGTTGTCAAATGTCCAATGTGCGATAAGAAGTACAGCGACGAGCGGTACATGCTGCGCCATCTGCGCACGTCGCACACGCGGCGGCACCACCCGTGCCCGCTGTGCCGCAAGTCGCTCTCGAGCGCCGCCGCCTTGAGGCACCACGTCATCACACACTGCAAACAGGACACCTTCCGGTGCAAAATGTGTCCGAAAACGTATGCCGACAAAAGGACAATCGTGAAGCACCTGCGGCGACGTCACAGTCTCAATGGCAcagatattaatttaaaagatttcTACACGCGATTAGACCCTCGTGAATGTGAGCTTGGGCTCAGTGAAGATGTTATGACAACCATTTTTGGCCCACCAAAGAAAACTGCCAATGATGTACTGGTAGGCGACTTCGTCACTCTCACAAAAGAAATCGAACTCCCTGAAAACAAAGAAAAGAAAGAGAAGAAAGAAACAACTGAAGAGGTTTCTAAGGAGAGCGAAGAGGAAAATGAGTATCAGGTATTGACGGTGTGCATAAAACAGGAACGTAAAGATGAGGAAAATAATGAAGAATTGGAGCCTACAGATTTTGTCACTGTCAAAATTGAACCTACGGACGATGATGAAATGGcctaa
Protein Sequence: MSSDDSDDEPLSVIAASKNINSGASIESTTENEEVKTIKKRKKKVPPVITKLPRRAKRVLTPPIIERPADVWLYLKDLKPTGPYNCLLCPEWFINKSKIIIHYVLNHKKDFCGICRYFVPDRDAWWAHMKFHTPWPCSQCVENFDTETTLRHHLSCTHKLVHCRLCHFRVPDDDQYNTHLFQKHNVTNVSSKDEEIFWEQDYEGSTKFLCLLCSKSNNISRTFFNHYMGYHHFTLKCFTRIICGRDPPFTVIGAEVSTEFVDGLKESPRFGYVDLDQKQPEGDQESNHSTNNETNTFLDVLVPEVKTESTSDPDEPKHDDTTKNDENDVTKTYKGDEDFDVTLMELILMQLSYFDYISQTLTHINSHTVPQNSDIVYEDVDSDLKVDLYCSLCQTKYETLQTFSVHMNKMHCVKSVPIFSCRVCATSFDSRSELDTHTLQEMKEFDDLWLCQFCDKEFDNRESTREHLTEHYDEMEFDNCFSPHLGFKCKYCPTLFWNETDRQTHQVRVHFSKHKEQYYKCESCNEIYSDKVWYIHHYLEKHHEENDKIPLYLLKCCLCCLVMETVEEMRDHFKSHHPEAMKVFCSLDSCKYKPLSHRKSFKMHLRLIHNPSARSDRSVTCTVCGREFTSLRACSAHMAQVHVPGKFKCKLCRETLQTMDERKLHYLIQHPGRHPFECTECGKSFQYKSSLYMHKQDHVPNKQSYTCSFCGKVFKKKDSFREHMQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACPHCPRTFADKGACTSHSRTHSKETSYACLYCGQTFVQKSKLTYHIRKHTGENLETCSICSKLFTSACSLREHMKTHNDKKQVVKCPMCDKKYSDERYMLRHLRTSHTRRHHPCPLCRKSLSSAAALRHHVITHCKQDTFRCKMCPKTYADKRTIVKHLRRRHSLNGTDINLKDFYTRLDPRECELGLSEDVMTTIFGPPKKTANDVLVGDFVTLTKEIELPENKEKKEKKETTEEVSKESEEENEYQVLTVCIKQERKDEENNEELEPTDFVTVKIEPTDDDEMA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00761987;
90% Identity: iTF_00007345;
80% Identity: -