Prid009042.1
Basic Information
- Insect
- Polyploca ridens
- Gene Symbol
- -
- Assembly
- GCA_951394255.1
- Location
- OX596248.1:16472185-16480406[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 1.5e-06 0.00012 23.2 1.9 1 23 202 224 202 224 0.98 2 27 0.0027 0.21 13.0 0.3 3 19 258 274 258 277 0.95 3 27 0.00015 0.011 16.9 2.0 3 23 307 328 305 328 0.96 4 27 0.0011 0.085 14.2 1.3 1 23 381 404 381 404 0.97 5 27 0.002 0.15 13.4 0.2 1 23 424 446 424 446 0.96 6 27 6.8e-05 0.0053 18.0 1.3 2 23 488 510 487 510 0.94 7 27 0.0004 0.031 15.6 2.4 2 23 550 572 550 572 0.97 8 27 0.00081 0.063 14.6 0.6 1 23 622 645 622 645 0.97 9 27 0.011 0.82 11.1 0.2 1 23 703 725 703 725 0.97 10 27 0.0064 0.49 11.8 5.9 2 23 737 758 736 758 0.97 11 27 0.089 6.9 8.2 1.5 2 23 770 791 769 791 0.96 12 27 0.0043 0.33 12.3 1.0 1 23 801 823 801 823 0.98 13 27 0.0067 0.52 11.7 8.5 1 23 852 874 852 874 0.96 14 27 0.0006 0.046 15.0 1.8 1 23 885 907 885 907 0.97 15 27 0.00063 0.048 15.0 1.9 1 23 915 937 915 937 0.97 16 27 0.0017 0.13 13.6 0.1 2 23 957 979 956 979 0.97 17 27 1.3 1e+02 4.5 3.1 1 23 1026 1048 1026 1048 0.94 18 27 0.0015 0.11 13.8 1.6 2 23 1059 1081 1058 1081 0.95 19 27 0.001 0.078 14.3 0.3 2 23 1104 1125 1103 1125 0.95 20 27 0.0011 0.086 14.2 0.3 3 23 1207 1227 1205 1227 0.94 21 27 0.022 1.7 10.1 2.8 3 23 1235 1255 1233 1255 0.96 22 27 0.018 1.4 10.4 0.8 2 23 1266 1288 1265 1288 0.95 23 27 0.63 49 5.5 2.2 2 23 1305 1323 1305 1323 0.89 24 27 0.23 18 6.9 0.5 2 23 1395 1416 1394 1416 0.93 25 27 0.0036 0.28 12.6 0.4 2 23 1427 1449 1426 1449 0.95 26 27 1.2 94 4.6 3.0 2 20 1487 1505 1486 1507 0.93 27 27 2.2 1.7e+02 3.8 0.0 8 21 1515 1528 1514 1529 0.92
Sequence Information
- Coding Sequence
- ATGGCCCTCAAACTCGGCAAGTGCAGGCTCTGCCTCAAGCTTGGCGACTTCTATTCTATATTTACGGTGGACAATGCCGTTCAGCTCGCTGAGATGGTTATGGATTGCGCCCGAATCAAAgtatatGAAGGAGATGGGCTCCCTGATAAAATTTGCTCAGAATGCATACAAAAGCTTAGCAGTGCATACATCTTCAAGCAACAGTGTGAAAGAGCTGATCAAGAGCTTCGTAGAAATTATGTACCTCCACCggGGTTCAGCGTCAGCCCTCCGCCGCCAAACAGACAAAGTAGCGATTCAGCTTTCTCAACCCACACCGACAGTTCCAAACCAACGTCTTCGACGGAAGGCAAAGGCACCCCGGCCAGGAGTCGCAAGCGTAGCATGGAGAGCGTCGACAACGCTTCCGTCGGCAACGCCTCTGTCGGCAGCCGCTCGCAGGAATACCGACCGAGCAGTTCCAAACGCGTCGAAGAACTAAGGAGGTCACAGAAAAGACCTCGGTGCACATCGGGTAACACGTCTTCCGACTACGAAGACAACAATAGTCAGTCGAATTTCATGGCCGAAACAGATTCTGACGAACCACTCATTAAGAATGACCACAAATGTAAAGTTTGTCCCAAGTCTTTCAAATCCCTTAAGAGTTTAGCTATTCATATGCGCATACATTCGAGTGGTAAAAATGATAGTTTGGCCGAAAATATCGTGGTTAACATTCCAAGTAAAAACGCCGAGGAGGATGCCACTGACGTTGAAGACAAATTGGGTTGTGAGAAATGTGGTAAGACATTCAAGTTGAAGATAATGCTGAAACGGCACAGCGAAATATGCGGGAAGGAACGTCAGAAGTCGCCTCAAAAAGAGTTGCTCGTCTCGCTGGAACCTATCGACGGCGTGCCGACGAAAAAGATCGACTGCACCATGTGCTCAACAAAATTCAAAACTATAGCTAACCTGGAGAAACACATGAGAGTATGTCACTCCGCAGTATTGAAGAGGGAAATGCTGCCAGTCGAGGCAAAGATCGAGAGGGGGAAAGTGACCATCCCTTGCATTTATTGTGAGGAGACATTCAACGATTATTACATTCATTGCGCTCACTTCGGCGCTTGTTCGAAGAGGGACGACACTTTACCGTACAAGTGTCCGATTTGTGAGAAAGTGATGTCGAGGAAGAACTCGTATTTCAATCATTTGAAGAACCTCCACTTCGAGCCGCGACCGTCGCACAACAAGTACGAGCACGAGGAGAAGAAACAGGATTACTTCGAGTGTCGGATGTGCAACAAGAAACTGCCCAGCCAGGATCAGCTCATCACGCATCTCGCGGCACACGTCTCCAATATAGAAGAACCTAATGAGATTGTAGTAGATGACGAATCTAGAGCCAGCACCTTAGATGATTCGGGATCGGTAACATCAATGTACAGTAGCTCGCAAGTGTCAACCGGCCCGCTCAAATGCAACATGTGCGACAAACGTTTCAAATACAAGAGAGCTTTAGAAACGCATCAAGTAAGGGTGCATAGTAGCGAGGGAGTCGAAATAAAAATAGAACCACCGGATAAACCTTCAACAAGCCTGCTCAGCGAAACATACAGACAATCAGAGTCTGAATCTAGTCAAGATGAGGGGGACGATAACACGTGTGATATTTGCGAGAAACAATTCTCATACAAAAAGCTGCTCCTACAGCATAAACGGACGAAACATAATATGTCGTCTGGTCATAAGCGAGCGAAAATCAACCTTAAAGACTGCTCGGTAAAGTGTCTAATATGTGACATGGATATGAAAGTGAGTGCGATAAATGAGCACAATCAGAAACACATCTCTGTGAACATGAAGCCCAGGAATGTGTATACTTGTGCGGAATGCGGAGACAAGTTCAAGAGTTGTAGTGCTCTAGCTAATCACATAAAACTGATACATAGGTTGAAGCAGCAACAGATGCCAAAGCAGTTTGAAGGTGATTTGGCGGATTTTTGTGAGGTCGTTGTGACAAAGGCGGAACCGCTGGACTGGATCCAGAGTCACAACGGCTTTGGTGAGGTTCCCGGAACAGATGACAAAGATGGCAAACCACTAGTGAACCTATCAGGGTTCACCTGCCCTATCTGCAGCAAGCAGATGCCAACACTAATATCTCTTAAGAGACACGTCAACTGGCATTCCAACGTCGGCAATAACATACAAAAGATTACCGAATGCTTTGTGTGCAAAGAGACATTCCGTTTCCAGTGTCACTACAAGATCCACATGCGGATTCACTATAAGGACCCCAACTTAGACCCCAAACTGCTCACCTGCTCGATCTGCAACCGCAAGAGCAAACACCTCCGCGCCGCCATGGCACACATGAACTACCACAAGCAAACCCGCTTCAGTAACAAAGACTACCAATGTTCTATCTGCAAGAGGGTCTTCCAATATCGAAAAGTCTACCTCTCACACATGGCGATACACTACAAGCGAGGAGAGAGCGCTCAGAATACTATAGTAGGGGATGTGCTTCCCAATTCGGCCGATAAAACTATATTTGATGGCACCCACACTTGCCACCATTGCGGCAAAGTATGCGATTCCGAAAACTCACTAAAACACCACATTATATGGCATAATTCCAAGACTTCGTTATACGGCGCTCGACACGAGTGCCTCATCTGTAATCTCGTATTCACAAATAAAAGGAGATTAGAAATCCACACGAGAAGCCACTACGAAGACGAGAATGGCCCCTTCAAATGTCACATCTGTGGAAAAGGTTACATCGAAGAGAATTACTTCAAGAGACATGTGAAGGGACATAACTTCGACCACCAGTCGCATAAAAAGAGGATCGATAAGCTCCGGAAAGATAAAGTGAAGTGTCCAATTTGTGCTAGGTTCTACCCCGACTTGGTGAAACTCATTCGTCATTTGAGGAGGACGCATCCGGAGAGCAAAATGATCAAAACTGATCCGGACGCGCCGCCGCCCATCTACTACTCTTGCAAGTTGTGCGCCAGAGAGTTCCTAGACGAGCGAAGGTTACAGATGCACGAGGAAGCTCATCTCAGGAAACCAGAGTTGTTCAAGTGTAAATTCTGCGGTAAGAAGGCGATGTCTCTAAAGAATCATAGAATCCACATCAAAGGCCATTTGACGACGAAGCACTTTGATAATCCTCTGAAGTGTCCGAATTGTGACGAGACTTTCGTCAAAGGATATGACTTACATCACCATCTGCGCGATGTTCACGATATCAACGAAACTTGGATAGCGGACGACACACAAAAGATCCTGAATGGGCCCCTCAAAGATTTGCAATGCTCCATCTGCTTCAAGGTTTTGGCCAGTAAAGGAAACTTCGAGAGGCACATTGACTATCATAACTCCCTCCGGTGTAACTACTGCTTTGACTACTTCAGCACGTTGAAGTTCCTGGAAGGCCATTTGGCGTTCACGTGCGAAAAGAAAAAGCTAGTCGGCGACTCTGAAGTTTTTCCCAAGAGAGTGAAGTGTCACTTGTGCTACAAAGCTTTCCACTTGCAAGTGAAGTTGGACTGTCACTTGCGGACGCAACACGACATCAAAGTGTCCAAAGAGGCCTCCGCGAGCAAGAAGGAAATAATCTGCGACTATTGCTTCAAAGTGTTCGAAAACGAATATGCGCTGAGGAATCATAAGATTTACCATCGCACCGTCGGATACTACGGGTGTCTCTATTGTAATAGAAAGTTCAATACTCTAACGCTCTATAGAAAGCATAAAAACAATCACTTCGCGCAGTTGAATGTGGACGATCCGACCAAGTGTGAACATTGTGACGAGACGTTTGTTGCGTTCAGAGAGATGATATACCACATGAGAGACGTCCACGGCGATAACAAAGAGTGGGTAGTGGAGCCCAAGGAGTCCATAGAGGAGACTTGCCCCATTTGCAACAAAATCTTCTTCAACCTCCACAGGCACCTCGACTACCACGAAGCGAACAAATGTCATAAATGCAACGAGTACTTCTACTCTCAAATCGATTGTGATAACCATCTTTGCGCCATCGAGAGCGACGATGAAGTAGCTGTGAACAATCAAACCGGAGAAACTAAGTACGAGGAGTGCACCTTCTGTTTCAAACCTATCACCAAAAAGGACTCTAAGCTGAAGCACGATAAAATTCACCGAGGTTCCGGATCGATTTCCTGCCGATTCTGTCCACTTAAATTTAAGACTATGGACGCTTTTAACATACACGCTTTCTCCCACCGAAGTAGGAAGTACAATAAGAAACCGATTAAATGTCGCAAATGCGGCGAGAAGTTCGTCAAATATGGACCGTTTATGCGGCACATGAAAGCCGCCCATAAGTCGACGAAGAAGGTACATTATAGGACGATTGTAAAGCCCGAGCCATGTGTCGTTTGCGGAGACTACTTCCCGAACCTGCACAATCATTACCGGGCTCACCTGCTCAACCAGTGTCAACTATGTCGCAAATATTTTACCTCCTCAAGAGTATTTAACAAACATGAATGTGATAAAGAAGATTATGATCCGTCTAAAGTGTTCACAAGTGAAGAGAATCTAATGGTACATATTAATGCTTACGTTCCCAAAGATGAGAAGGATGACGAGAAATTCTACGGTCACACagatgatgaagatgatgatcAGGACGTAGCGTTACCCGAACCCCAAGATGAAGAAAGTATAGTTGAAAGAAAAGTGCATTTGATGGTTCAGTCTCCCATAATATCCGACGTACTCTCCCTCTACCAGAAACAAGAGGTCGCAAGTCAAAATGGGGATGATATAAGTCAAGATGGGGATGATGTAAGTCAAATTGGGGATGATATTAGCCAAAATGGGGATGATAGCCAAAATGGGAATGAAGTCATTAAAAAAGTTGCGAGTTCCGTTGATCAAAATATCGTCAATTTAACAGATGATGATTCGATGGATATTACCGATACTATTCCAGTAGTTATTATACTAGATGATTGA
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFTVDNAVQLAEMVMDCARIKVYEGDGLPDKICSECIQKLSSAYIFKQQCERADQELRRNYVPPPGFSVSPPPPNRQSSDSAFSTHTDSSKPTSSTEGKGTPARSRKRSMESVDNASVGNASVGSRSQEYRPSSSKRVEELRRSQKRPRCTSGNTSSDYEDNNSQSNFMAETDSDEPLIKNDHKCKVCPKSFKSLKSLAIHMRIHSSGKNDSLAENIVVNIPSKNAEEDATDVEDKLGCEKCGKTFKLKIMLKRHSEICGKERQKSPQKELLVSLEPIDGVPTKKIDCTMCSTKFKTIANLEKHMRVCHSAVLKREMLPVEAKIERGKVTIPCIYCEETFNDYYIHCAHFGACSKRDDTLPYKCPICEKVMSRKNSYFNHLKNLHFEPRPSHNKYEHEEKKQDYFECRMCNKKLPSQDQLITHLAAHVSNIEEPNEIVVDDESRASTLDDSGSVTSMYSSSQVSTGPLKCNMCDKRFKYKRALETHQVRVHSSEGVEIKIEPPDKPSTSLLSETYRQSESESSQDEGDDNTCDICEKQFSYKKLLLQHKRTKHNMSSGHKRAKINLKDCSVKCLICDMDMKVSAINEHNQKHISVNMKPRNVYTCAECGDKFKSCSALANHIKLIHRLKQQQMPKQFEGDLADFCEVVVTKAEPLDWIQSHNGFGEVPGTDDKDGKPLVNLSGFTCPICSKQMPTLISLKRHVNWHSNVGNNIQKITECFVCKETFRFQCHYKIHMRIHYKDPNLDPKLLTCSICNRKSKHLRAAMAHMNYHKQTRFSNKDYQCSICKRVFQYRKVYLSHMAIHYKRGESAQNTIVGDVLPNSADKTIFDGTHTCHHCGKVCDSENSLKHHIIWHNSKTSLYGARHECLICNLVFTNKRRLEIHTRSHYEDENGPFKCHICGKGYIEENYFKRHVKGHNFDHQSHKKRIDKLRKDKVKCPICARFYPDLVKLIRHLRRTHPESKMIKTDPDAPPPIYYSCKLCAREFLDERRLQMHEEAHLRKPELFKCKFCGKKAMSLKNHRIHIKGHLTTKHFDNPLKCPNCDETFVKGYDLHHHLRDVHDINETWIADDTQKILNGPLKDLQCSICFKVLASKGNFERHIDYHNSLRCNYCFDYFSTLKFLEGHLAFTCEKKKLVGDSEVFPKRVKCHLCYKAFHLQVKLDCHLRTQHDIKVSKEASASKKEIICDYCFKVFENEYALRNHKIYHRTVGYYGCLYCNRKFNTLTLYRKHKNNHFAQLNVDDPTKCEHCDETFVAFREMIYHMRDVHGDNKEWVVEPKESIEETCPICNKIFFNLHRHLDYHEANKCHKCNEYFYSQIDCDNHLCAIESDDEVAVNNQTGETKYEECTFCFKPITKKDSKLKHDKIHRGSGSISCRFCPLKFKTMDAFNIHAFSHRSRKYNKKPIKCRKCGEKFVKYGPFMRHMKAAHKSTKKVHYRTIVKPEPCVVCGDYFPNLHNHYRAHLLNQCQLCRKYFTSSRVFNKHECDKEDYDPSKVFTSEENLMVHINAYVPKDEKDDEKFYGHTDDEDDDQDVALPEPQDEESIVERKVHLMVQSPIISDVLSLYQKQEVASQNGDDISQDGDDVSQIGDDISQNGDDSQNGNEVIKKVASSVDQNIVNLTDDDSMDITDTIPVVIILDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01416096;
- 90% Identity
- iTF_01416096;
- 80% Identity
- -