Prid027926.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Polyploca ridens
Gene Symbol
zfh1
Assembly
GCA_951394255.1
Location
OX596271.1:1149662-1156996[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.00012 0.0096 17.2 0.1 2 21 111 130 110 131 0.95
2 25 4.5 3.5e+02 2.8 0.3 2 23 136 156 135 156 0.91
3 25 0.11 8.4 7.9 6.9 1 23 161 183 161 183 0.98
4 25 0.27 21 6.7 1.0 1 16 188 203 188 210 0.84
5 25 0.21 16 7.0 5.9 2 21 214 233 213 234 0.92
6 25 0.00058 0.045 15.0 1.4 1 23 246 269 246 269 0.97
7 25 0.0004 0.031 15.5 1.2 2 23 276 297 275 297 0.97
8 25 0.00082 0.063 14.6 2.4 1 23 304 326 304 326 0.98
9 25 1.5e-05 0.0012 20.0 3.3 1 22 443 464 443 464 0.94
10 25 0.17 13 7.3 1.0 2 23 469 490 469 490 0.95
11 25 0.00071 0.055 14.8 0.4 1 23 495 518 495 518 0.97
12 25 0.0001 0.0077 17.5 0.1 1 23 523 545 523 545 0.94
13 25 0.00025 0.02 16.2 0.9 1 23 581 604 581 604 0.93
14 25 2.3e-05 0.0018 19.5 2.8 1 23 610 632 610 632 0.98
15 25 6.6 5.1e+02 2.3 0.6 1 23 666 689 666 689 0.88
16 25 6.2e-05 0.0048 18.1 0.7 2 21 815 834 814 835 0.93
17 25 2.9 2.2e+02 3.4 0.0 3 23 842 863 840 863 0.95
18 25 0.0046 0.36 12.2 1.2 3 23 870 891 869 891 0.96
19 25 0.0011 0.085 14.2 2.5 2 23 897 918 896 918 0.96
20 25 1 80 4.8 0.5 3 20 923 940 922 942 0.91
21 25 4.2e-06 0.00033 21.8 0.9 1 23 968 991 968 991 0.95
22 25 0.00054 0.042 15.1 0.5 1 23 997 1019 997 1019 0.95
23 25 0.12 9.4 7.8 0.1 1 23 1025 1047 1025 1047 0.97
24 25 0.0017 0.13 13.6 0.5 1 23 1053 1076 1053 1076 0.94
25 25 0.00047 0.037 15.3 0.7 3 23 1083 1104 1081 1104 0.95

Sequence Information

Coding Sequence
ATGGAGTCGTCGAGATCGCTGCCTAACAGACTATGCATCCACTGCGTGTCCAAAATATTAGATTTCATACCGTTCATACGACTTTGCAAGGATTCCGTCAGCAAGTGGAGGCATATGATAGAGCACTTGACCCTACCGCCAGTACCTAAACCCAGAGTCTTCGTGCTCATATCAAGCGATTGTCAGAAACGAGAGCTGTTCCATTCTACCAAAAAGAATATCAAAGACAAGAAAGAAGCTGTAAGGGTTCTACAACAACGTTTAATATGGAAAAAGTTCAGTACCATAAGACGCGAGAAAGAGATACAATTGAAATTAACAAATGACATGTCGTGTCCGGAATGCGACAAAGCTTTCTATAGCATTGACGCACTCAATAATCACATGAAATATGGAAAGAAAAAGATGTGCCCACACTGCAATCTTATTGTGGATCTGGAGGCGTATAAATCTCATGCAGAAACACATAATGCGAACGTTTATTCGTGCGATATATGTCATGAGTGTTTCGTAATGAAGAGATTCTTCTTGAAGCATAAATTAAAGCATTCAAGAGGCAAACACATATGTCCTGAATGCAATCTATCATTTTCAAACATGAACAAGCTCGCTTGCCATGTACCGAAACATAAGCGTTGTGTTTGTTCGACGTGTAACAAGAAATTCACAAATAAAATCTGCTTTCTGAATCACAAGAAAGTCTGTGCTCAAAGCAAAGATATTAGCGAAGCAAAATTCATCTGTGATTATTGCTCGAAAgagtataattttaaaatggctttgaaaatgcatatgaaaataaaacatctCGAAAGAAAGATGTTAAAATGTGATAAGTGTGAAAAAACCTTTCCATTTAGGGCACATTTAGTTGAACATGAACTCACTCACAATAAAGTCTTAGATAGATACATCTGCAAGAAGTGTGGATCGAAGTATAGTTCTCGTAGGGGATACGAAAAGCATATTAAAAAGCATTCGAGAGAAGATGAAATAGATAAGGGGAAAGTCCTGGAGGAGCCGTCCTTGCCTCAGGGGTTATGCCGAACATGCTCTGAAGACATCGTTACAGCAATACACATCGGACAACTGAGCAAACTCTCCGCACAACATTGGGCCTCGGCGACCACATACCTGTCCAAAATCAACGACGCGACTGATGAAGATAAATGCGTCTTTCTCTTCTACAATGGTGAAGAAAATACTATAGTGAAAGATCAAATTGATCGTGTCCCTAATGTGCAAGAAGCTCTCGAGAGATTGAACGGAAGATTTGTTTTTGATAGCCCTAAGCCAAGGAAGATAAGACGTTTAAATGAGGTTTCATGTAAATGCCCGATTTGTGGCAAAACGTACACAAATCcatgttacttaaataaacattTGAGAAGTACCCCTAAAAGATCTTGCAGCGAATGTGGTCTAGTGGTACCGAAGAAGAATTTGTGCAAACATTTGTCCAAAGCCCACGATATAGTCGTTTATACTTGCACCCGTTGCAACGAAGTGTTCGAAGATGAAGAATATTTGATGCAACATTGGCTCAAATCTCACGGCGCAAAGAAGTTCTCCTGCGAAGACTGTGGTCGGAGTTTTGTGAACGAACGAGCGTTGAGCGCACATGTGTATGCCCACAGCCTCTTCCACTGCAAATCTTGCAGCCTTAGCTTTGAAAATCGCAAATGTTGCAAGCATCACGAGAAACAATGCAATTCGGAGCAGCAACCAATCTCTTCGGCGTACGAATGCGACCACTGCGGTGTGTCATACAAAAAAAAGCCATCTTTAAGGATACATATCGTCCAAAAACATATGAATGTACTCCCATTTGTTTGCACAACATGTGGGAAGCGTACGTCAACTAAAGCTCACTTGAGATCCCATGAAATGACTCATAAGAAAGAGAGGAAGATATACGAATGTTATTGCGGAGCGAAATTATTGTCCGAGCTGGGATATCAATTGCATCAAAGGATACACAGCGGAGAGAAGCCATTCGCGTGTGACGAGTGCGGGGATAGATTCCTGTCCTCTTCGCGGAGGTTGGATCATATAAAGAGGAAACATAGAGGCACCAATGGCCTGCCTTATGCTTGCGAGAAGTGTGCGGCGCGATTTGTAAAAGATGAAGCTCTCTGTCCACCAGGAGTATGCGTTGGTTGCGCCAGTACCGCCCTCGCCGCGCAGGAGTTCAGCATCTTTGTTAAAAACGCACAAAAAATGTGGCACAAAGCGGTCACAAGCTTATCGGTCCTTTCCACCTCCACAGCGCCCAACGTCAAATCACTATACGCCTTCGTCAGAAAAACTGATCTGTCAATCCAAACCGTTAAAGACTTCGCAGGCGGTGACACGAAAACAGTTCTAAACCGATTAAAAAACAGATTTAATAAAAAGCCGGCTAATAGGAAACCGAGGAACGCGCGCGCAGGACCTTCATGCATTTGCCAGGACTGTGGAAAAACGTTCATCAGTCCATATTACTTGAATATGCATTTAAAAAATAGTGGACAAAAGGATGCTTGCTTAATTTGTGGCGCTGTCGTTTTTAGAGGACGTGAAATGAAGGACCATCTTTCAACAGTACATAAAGAAAAAGTATTACTGTGTAAACATTGTCCTATGCTTTTTAGTAGTGAATCCAAACTAATGAAGCACGTTATAAAAGCACATAGCCCCGGTGTCCTAACTTGCTGTGATTGCGGAAGGACTTTCCCTAGACACGCATCGTTTGAACTGCACGCGCAAATGCATGCAGTCCGCATATGTCGAGCTTGCGGGATACAGTTTACCAATCGCGGCTGTTATAGGGAACATCGCGCCCAATGCGAGCCAGACGCGAAACCTGACGCGCAATCTGTACCCCGTAACAGACGGTCGAATATCCGCGACCCAGCTCAATATACCTGCGATCATTGCGGCAAAACTTACAATTCTAGGCCACAGTTAAAGAACCATATCATATGGATTCATATGGACGTAAGACCTCATCAGTGTCAGTGGTGTGGTAAACGTTTTTATACCCCTGCTAGGTTAGCTGAGCATACTGTAGTCCATACTCGTGTCAGAAACTTCGAGTGTGATATTTGTGGCGCGAAATTGGTTTCCAAAATGGCCGCCGTTTACCACAGGAGGCGTCATACAGGCGAGAAACCCTATAAATGTGAAGACTGTGGAGAAACGTTCATATCTGCATCAAGAAGATCAGAACATGCAAAGAGAAGGCACAATGTCTTGAGAATTAATTGCACTCTGTGTACAGGTACTTTTGTGAGGCGATATGACCTTAAAAAGCATATGGACAAGGTACATAAAAAGGAGGACGAAGTGGACGAGCGGATTGTGAAGCGGGATTTAGGGGAATTGTGCGAAATAGAAAATTGA
Protein Sequence
MESSRSLPNRLCIHCVSKILDFIPFIRLCKDSVSKWRHMIEHLTLPPVPKPRVFVLISSDCQKRELFHSTKKNIKDKKEAVRVLQQRLIWKKFSTIRREKEIQLKLTNDMSCPECDKAFYSIDALNNHMKYGKKKMCPHCNLIVDLEAYKSHAETHNANVYSCDICHECFVMKRFFLKHKLKHSRGKHICPECNLSFSNMNKLACHVPKHKRCVCSTCNKKFTNKICFLNHKKVCAQSKDISEAKFICDYCSKEYNFKMALKMHMKIKHLERKMLKCDKCEKTFPFRAHLVEHELTHNKVLDRYICKKCGSKYSSRRGYEKHIKKHSREDEIDKGKVLEEPSLPQGLCRTCSEDIVTAIHIGQLSKLSAQHWASATTYLSKINDATDEDKCVFLFYNGEENTIVKDQIDRVPNVQEALERLNGRFVFDSPKPRKIRRLNEVSCKCPICGKTYTNPCYLNKHLRSTPKRSCSECGLVVPKKNLCKHLSKAHDIVVYTCTRCNEVFEDEEYLMQHWLKSHGAKKFSCEDCGRSFVNERALSAHVYAHSLFHCKSCSLSFENRKCCKHHEKQCNSEQQPISSAYECDHCGVSYKKKPSLRIHIVQKHMNVLPFVCTTCGKRTSTKAHLRSHEMTHKKERKIYECYCGAKLLSELGYQLHQRIHSGEKPFACDECGDRFLSSSRRLDHIKRKHRGTNGLPYACEKCAARFVKDEALCPPGVCVGCASTALAAQEFSIFVKNAQKMWHKAVTSLSVLSTSTAPNVKSLYAFVRKTDLSIQTVKDFAGGDTKTVLNRLKNRFNKKPANRKPRNARAGPSCICQDCGKTFISPYYLNMHLKNSGQKDACLICGAVVFRGREMKDHLSTVHKEKVLLCKHCPMLFSSESKLMKHVIKAHSPGVLTCCDCGRTFPRHASFELHAQMHAVRICRACGIQFTNRGCYREHRAQCEPDAKPDAQSVPRNRRSNIRDPAQYTCDHCGKTYNSRPQLKNHIIWIHMDVRPHQCQWCGKRFYTPARLAEHTVVHTRVRNFECDICGAKLVSKMAAVYHRRRHTGEKPYKCEDCGETFISASRRSEHAKRRHNVLRINCTLCTGTFVRRYDLKKHMDKVHKKEDEVDERIVKRDLGELCEIEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00007329;
90% Identity
-
80% Identity
-