Prid008953.1
Basic Information
- Insect
- Polyploca ridens
- Gene Symbol
- MBD-R2
- Assembly
- GCA_951394255.1
- Location
- OX596248.1:14653763-14668006[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.1e-17 2e-13 50.6 0.0 5 58 742 795 738 864 0.85
Sequence Information
- Coding Sequence
- ATGGCTGtaaaaaaatgttgtatagAAAACTGTAACTCATGTTCAACAAGAAAAGAAGACTATGGGGTAACCTATCACAAGTTTCCAAAAGACGAAACATTACATGGTACATGGATGTCTATTACACATTTAAAAAGTGTTAATACAGATTTAGCTACATATGTGTGCTCGAGACACTTTTGCAAAAGTGATTTTCAATCGTATAAGGACTCTAAATACATATTGAAGTCAGATGCGGTACCTTCAATATTTTCGTGGAACGTATCTGAAAGAGACTTAAGGATGGATGTAGACACACCTATAGATGACACAGACAAAGACAAAAACAACACATCAACGGGCAGTAATGAATCTGAAGGTGAAAATGTAGATGcaataaaaaagtttattgaAGAGCAGGAAAAAGAGATAAAGGAGCAAGATGAATTGGAAAAAGGAAATATTGATGCTGTTATTGGTGGTCAGGAGGAGCCACTTGCAGTGGCTACAAGTGTTATGGACATGATATTGAATAAATCAGAAGCTAAGATTGCTAAGAATGAAGTGAAAGCTACTACAAAACAGACTTTAAGTCCTGGAGGAGATAAAGgAAACAGTAGTATGGCCCTCTCAGTGGGTTCCAAAGTGGAAGCAAAGGATTTTGGTGATTTCTGGTATCCAGCGGAAATTActgaggttgattatgatgagATGGAAGTGTTGGTGCATTATGAGCTTGATTTGAAAAAACATGACGAATGGATAAGCGTAAGCAGCCCACGGCTTAGGCCCATCGGAAGTGGTCCAACACAAACCAAACCACCGGAAGAAATTGTGACTGTACCGCCTCCAGTAAAAGAAGAAATAAAAGAGACTAAAGTTGAAGAGAAGTCGAAATTGGTATTTGATGTTGGTGAAAGGTGCCTCGCTCGATGGAGGGATAATAGAAGATTTATGGCGACGATTAACAAGGAGTTAGAAAACGGCAACTTCGAAATAATCTTCGATGATGGCTTCCATTGGACTTGTAATATATCGAGGTTGAGCAAACTAAAAGAGAAACATAATGAGTCACTCACGATAGATACATCATCCAGGTCGCCCACGCCTTCAACGCTCTCACCGGTATACGGTGCTGGACCCAGTCATGCAACCACCTCGAATCTTCCACCGACTCCAGCTTACCACACACATCTGTTTGACCCCACCCGCGACTATTTAGGTTCGAAAAGCGAACGTCGAGAGATGAAACGcaaattaaacataaaagaaaTATTCAATATAGGTCAGAAAcgaccaaaaatactgaaaccTAAGGATGTCAAACCGGTATTGAGAAAACCTCAAGTTAAAAAGGAAGTGAAACCTAAATTGGAAATTGTAGAGCCAGTTATTAAAAAGGAGGTAAAAGTAGAAATTCCTGatGCTGTCGCTTCCATTATAGGTTCAGATGACAAAGGTGAGTCTGTCGACATAGAAATATCAAGTATAAAAGAAGAACCAAAACATACAGAGGAAGATAAGCAAATAGAAGAAAAGTTAGAAGTTAAAATGGAAATAAATAGTGCTGATGAAGTGACATCTAATGATGCCGCTGATACTTCTGAACCATTTGATTGTAAAGCCGATGAGGATTCTgTTCTAGAAGAGGAAGTTAAACTTGAAAAGTTTGACAAGCAAGACGACGTGAAACACGAAGAGGTGATCGATAGGATAAAGGAAGCCATCAATAAACTTGAAGATGGATTAAACAAAGTTGAAAAAGAAAAGTTAAATTCACCCAAACCAGAAATAACAGAAGAGAAACCTATAGAACCTGAAGTAAAGGTACCAGATGAACCAGCCATACCGGAAATAATTAGTGACAAAGATAAGGATCCTGTCGACGTTAAAATAGAACCGGAAAAACCAAAGAAAGGAATGGCAAAAATAAAGAAAGGTAAAAAATTCAGATTGTTACAGGAGAAAAAGGTAAAGAAACAAGTAGAGAAAGTGAAGAATGAGCTGGAGGAGATGAAAAAACAGGTCGAGGAGATGAGGCAGCAGATGTTGATGAAGACCCAGGAGTTGGCGACAAAGTCTACAAAGACGTCTCAGAGTCAGGAAATGCCAGAGAGTTTCCTGTTACCTGGCGAATGGTGTGCTAAGTGGTTGAATGGTCAACCTATTGGGACAGTCAGTGAGATTGAGTGCGAAGTAAAAGTTGATGGTCATTCCAGGCCTGCATTACCACGGAGGAGTGTACAGGTTGAAGATAAGAGATTGCCAGCGGGATGGACTAAACACATGGTGCGCAGAAGTTTCGGACATTCAGCAGGAAAGTGGGACGTTGTACTAGTCagTCCAGATAATCGCAGGTTCCACACTAAAAACGAGATGAGAAATTACTTGGAAAACAATCAGACTGTTGCCGAAGAACTAGCACCTTATCATCATGCAATCATGGACTTTGGGGTACATTTAAAACTGTCACGGCGTATGGGATGGATTTCAATCACCCCAGGTGGAGTACCAGATGCACCCTTGTCACCCTTACCCGCTGGCACTTTGAGTAGCACGTCGCCTTTAGTGAAACGTAAGAAATTAAGCCTTAAGAAGAAGGTAATAAAGGTCAAGGAGAAGAAACGTAGATTGACTATAAAGTTGAAGGTGCCACGTCCTGTGATTACGGAAGAAGACGTTGGGGTTTTGCCCATTGCGGAACCGCCACTCGATCAACCAACGTTGGAGGATGGATATGTATACGTCGGATCTTTGAAAGTTCAAGTAATCGACAATCTTCTCCGCTGTCCGGCCGAAGCTTGCTTGAAAAACTTCCGCAACAACACGCTCCTACAAATGCACATTAAACACTATCACAGAGAACTAAGGAAAATGTTGGGAGCCACGCCAAAAGTGCTGGATCTAGCATACGCTAGGACTATTCCCATGAAAACTGAAGAGAGAAAACCGCAGAGTGATCCAAAAGTGCTGAAAGTAAAGATATTGAGACCAAAACGCGAAGAACCTAAAATAGAACCAAAGGAAATATCTGAATTAGAAGTAGATGTTGGTCCCACGACGCCAGTCAAAGATACAGATAACACACCTAAAGCTTTAGACTCTCCTAAATTAAGACTTGCTCTCGTGAATAAACCAGTAAAAAGACCAAGAGTGCTGTTACCAGTGAGAAGACCAGATCCTGAACCAATACCAACAGACTTCAATGAAGATATCTTTGAGGACGAGGTAGAAGTTGCAGTTGATGTACCTTTACTAGAGCCATTGGACTTCGAAACGGCAATTTCTACGCATACAGTGACTAAACCATTGTTTGataagaaaaagaagaagtcTTTCGCAGCGGTGTCGCGAACGGGTTTCAGCGAAGATGACGAGTGGTTTGGAATTAATTCGGACTTAGACACGAGGTCAAGCTTCCCTCGGTCTGGGACACCTGATTCTAAGATTATGGACGGGAAGGCAAACCTTGTGTCTTCAGAGTCTAATGAAGATCAGAAGGATCCGTCTAATATGTACATGTTCACAGAAAATGGTGAACGTATAAAGATAGTGCACATGAAGCGCGAGGAGATCATCAACTGCCACTGCGGGTTCCGCGAGGAGGACGGGCTCATGGTGCAGTGCGAGCTGTGTCTGTGCTGGCAGCACGCGCTCTGCCACAATATACAGAAGGAATCAGAGGTGCCAGAGAAATACACGTGTAGTATATGCGTGAACCCTCGGCGCGGGCGGCGGTCGAAGCGGTTCGTGCACGATCAGGACCGCGTGTACGAGGGCCTGCTGCCCGGCGCGGGCAAGCCGTGCGAGTCGCTGCGCCGCTCGCACGAGCTCTCCGGGAACCTCATCCGGATCGAGGACGCGCTGCACGCCTTGAGAATCAAGTATTATGTTGCCACtAACAAAAACCATCCAAAACTGTACCTGTGGGCTGAAGACTGGGAAGCCGGCGAGTTGAGCTACACACAAGAGAAGCTGAACTCCGACTACTCCGATCTGAACATAATGATCAGCACCCTCGGCAAGGAGAACCTGCCCATCAAGCCTGAGGACATGAAGGATCTGCATCTCAATATGACGCCGCCTTTGGACGAACATGACGGGGACAGGTATTGTCAGCGGGACGTCGGCCTGGGGTCTGCGACGTTACTGAGCGGGCTGCTCTCGAGTCCCGGAGGAGCCTCTCTGGATCTGCCCATCACCACCTCCGACCTCGAGAGATTAGCTAAATCCGTTCAAGATCGCGGGTGCGGTCCGCAGCCGGAGGCGGCGATCGAGAACAGCGCGTGCCGCGAGCGGCTGCTGCGCCACATCTCGCGCTGCCACGCGCGCCTCGACGCACGGCTCGACTCTATCGAGGCACAGGTCGCAGAACTGGAGTCCCAAGACCCGTCGTTTGAGAACGATGAGACCGCGGATTACTTCCCGCGCACCAAGCAGACCATTCAGATGCTCATGCGAGACCTTGATACTATGGAAGAGCTCGGAGTCATCACATAA
- Protein Sequence
- MAVKKCCIENCNSCSTRKEDYGVTYHKFPKDETLHGTWMSITHLKSVNTDLATYVCSRHFCKSDFQSYKDSKYILKSDAVPSIFSWNVSERDLRMDVDTPIDDTDKDKNNTSTGSNESEGENVDAIKKFIEEQEKEIKEQDELEKGNIDAVIGGQEEPLAVATSVMDMILNKSEAKIAKNEVKATTKQTLSPGGDKGNSSMALSVGSKVEAKDFGDFWYPAEITEVDYDEMEVLVHYELDLKKHDEWISVSSPRLRPIGSGPTQTKPPEEIVTVPPPVKEEIKETKVEEKSKLVFDVGERCLARWRDNRRFMATINKELENGNFEIIFDDGFHWTCNISRLSKLKEKHNESLTIDTSSRSPTPSTLSPVYGAGPSHATTSNLPPTPAYHTHLFDPTRDYLGSKSERREMKRKLNIKEIFNIGQKRPKILKPKDVKPVLRKPQVKKEVKPKLEIVEPVIKKEVKVEIPDAVASIIGSDDKGESVDIEISSIKEEPKHTEEDKQIEEKLEVKMEINSADEVTSNDAADTSEPFDCKADEDSVLEEEVKLEKFDKQDDVKHEEVIDRIKEAINKLEDGLNKVEKEKLNSPKPEITEEKPIEPEVKVPDEPAIPEIISDKDKDPVDVKIEPEKPKKGMAKIKKGKKFRLLQEKKVKKQVEKVKNELEEMKKQVEEMRQQMLMKTQELATKSTKTSQSQEMPESFLLPGEWCAKWLNGQPIGTVSEIECEVKVDGHSRPALPRRSVQVEDKRLPAGWTKHMVRRSFGHSAGKWDVVLVSPDNRRFHTKNEMRNYLENNQTVAEELAPYHHAIMDFGVHLKLSRRMGWISITPGGVPDAPLSPLPAGTLSSTSPLVKRKKLSLKKKVIKVKEKKRRLTIKLKVPRPVITEEDVGVLPIAEPPLDQPTLEDGYVYVGSLKVQVIDNLLRCPAEACLKNFRNNTLLQMHIKHYHRELRKMLGATPKVLDLAYARTIPMKTEERKPQSDPKVLKVKILRPKREEPKIEPKEISELEVDVGPTTPVKDTDNTPKALDSPKLRLALVNKPVKRPRVLLPVRRPDPEPIPTDFNEDIFEDEVEVAVDVPLLEPLDFETAISTHTVTKPLFDKKKKKSFAAVSRTGFSEDDEWFGINSDLDTRSSFPRSGTPDSKIMDGKANLVSSESNEDQKDPSNMYMFTENGERIKIVHMKREEIINCHCGFREEDGLMVQCELCLCWQHALCHNIQKESEVPEKYTCSICVNPRRGRRSKRFVHDQDRVYEGLLPGAGKPCESLRRSHELSGNLIRIEDALHALRIKYYVATNKNHPKLYLWAEDWEAGELSYTQEKLNSDYSDLNIMISTLGKENLPIKPEDMKDLHLNMTPPLDEHDGDRYCQRDVGLGSATLLSGLLSSPGGASLDLPITTSDLERLAKSVQDRGCGPQPEAAIENSACRERLLRHISRCHARLDARLDSIEAQVAELESQDPSFENDETADYFPRTKQTIQMLMRDLDTMEELGVIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01251828; iTF_00007108; iTF_00007159; iTF_01415916; iTF_01415861; iTF_01437068; iTF_01437125; iTF_01083349; iTF_01083413; iTF_01416853; iTF_01416801;
- 90% Identity
- iTF_00007108;
- 80% Identity
- iTF_01251828;