Prid007035.1
Basic Information
- Insect
- Polyploca ridens
- Gene Symbol
- -
- Assembly
- GCA_951394255.1
- Location
- OX596247.1:1808918-1818934[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.033 1.1e+03 -0.5 0.9 230 276 54 102 48 109 0.45 2 3 5.4e-19 1.8e-14 54.6 12.1 1 43 125 167 125 193 0.92 3 3 0.017 5.6e+02 0.4 0.4 213 236 197 219 183 222 0.57
Sequence Information
- Coding Sequence
- ATGGGGCATCGATCCGAAGTGGCCACGCCTGATAATAGTGATGAGGAGAGTGGCGAGGCCTTCACCGACGGTGATTTCGGCGATTCTGATGAAGAAACTATTATAGAAAAGAACGATGATACCAAATCGTCGCATATTCCGATCAATGAGACTGTAAACGAAGAACTTGGAAAGATGAATGATTCAATAAATGATTTAGACCAAACTAATGGCTCAGAGAGTCACAACAAAGTTAACGGACATAAGAGTAGTGAAAATGGACATTTAAGTGAGTCAGAAGCTCACAGTGAAGCGAAAACAGAGTTTAGGAGGGATTCCCACGGTGATCAGAATCCATCAATCGTTGGAATTCTCGGTGACCAACAAAATCATGCTGAGCAGCGATTGGCGGCGCGTCGAGCGGCGCGGGCAGAGGCGCGGGAGATCCGCATGCGGGAGTTGGAGCGACAGCAGCGGGAACAGGAGGACCATGCTGACAAGGCATACGACATGTATGGCAAGACAgGCAGAATTTATAGTGTGTTTAAACCACAattatacctattatttaaTTTCCAGGCAAGAGAAGCCCTCAATCGAGTCGAAGAGTTGGAGACGGAGAACAGCCACTTAACCAAACGTCTCGACAAACTCAAAAACGCCAAGTCAGCGCTCCTAAAGGATCTGTGA
- Protein Sequence
- MGHRSEVATPDNSDEESGEAFTDGDFGDSDEETIIEKNDDTKSSHIPINETVNEELGKMNDSINDLDQTNGSESHNKVNGHKSSENGHLSESEAHSEAKTEFRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYGKTGRIYSVFKPQLYLLFNFQAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -