Pser000182.1
Basic Information
- Insect
- Polyplax serrata
- Gene Symbol
- Mbd2
- Assembly
- GCA_037055365.1
- Location
- JAWJWE010000001.1:1723720-1725523[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.9e-09 4.5e-06 25.6 0.3 9 74 11 96 4 99 0.91
Sequence Information
- Coding Sequence
- atgtCGAGTGATAAGAGACGATACGAATCGTCCAGCATCTCAAAGTCGTGGGGAAGGGACGACGTTATGAGAAAACAGAGTCTCTCCTCAGGAAAAgttgatatttattattacagCAGGGGAATGAGAAGTGATGCATCTCTGGTTCCACCCATAAGACAAACTGcatcaatttttaaacaacCAGTAACAGTTCACCGAACTCAGGCAGAAGGAAAAGTCAAGTCAGACTTCAAGCATGGAACACAGGAGAAACCAAAGCAGCTCTTCTGGGAAAAACGTTTGGAAGgtCTTAGAGCTTGTGATATTGATGGGCACGAATTTAACATAATGGAGCTTCCCAAGAGTCTGAAGACCATAGGACCTCACATCGCAGATGAAACTATCCTGCAGTCTGTGGCTACAGCGTTGCACGTGTCGAGTCAGCCTGTGACTGGGCAAAACACCCTGAAAACCAGCATGGACAAAAATCCAGGTGTCTTCATAAATCCTGAACAGCCGTTGGTTCAGGCTGTCAATGTATCCGACGAAGACATCAAGAAGCAGGAGGAGAAAGTACTGATTGCTCGCAGAAAACTTCAGGAGGCCTTGTGCGTTCACTAA
- Protein Sequence
- MSSDKRRYESSSISKSWGRDDVMRKQSLSSGKVDIYYYSRGMRSDASLVPPIRQTASIFKQPVTVHRTQAEGKVKSDFKHGTQEKPKQLFWEKRLEGLRACDIDGHEFNIMELPKSLKTIGPHIADETILQSVATALHVSSQPVTGQNTLKTSMDKNPGVFINPEQPLVQAVNVSDEDIKKQEEKVLIARRKLQEALCVH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00362539; iTF_01164907; iTF_01308696; iTF_01308029;
- 90% Identity
- iTF_00362539; iTF_01164907;
- 80% Identity
- -