Pser004510.1
Basic Information
- Insect
- Polyplax serrata
- Gene Symbol
- -
- Assembly
- GCA_037055365.1
- Location
- JAWJWE010000005.1:856644-858990[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9e-12 2.2e-08 33.1 0.0 10 72 24 82 18 85 0.85 2 2 3.1e-16 7.4e-13 47.4 0.2 3 71 358 422 356 425 0.87
Sequence Information
- Coding Sequence
- ATGCTAGATGAAAGCAAGAAGGTTGTCAAGGGCTCCAAACAGCCTGTTATTGATGATTGCTTAATGAAGCCATTTGCTCTCGGCTGGACTAGGGAAGTTGTCAATCGAATCATCACAAACAATAGAAATCTCAACTGTGACATTTATTACATCAGTCCAAGTGGAAAGAAGATCAGATCATTAACTGAAATCAAGTCGAACTTAACTGATGGACTGACACCAGAATGTTTCTCATTCCGAAAGCAACCACTAGGTGTAAATGCAAGTTATGAAACAATAAGAGATGCAAGAGtaaggagaaaagaaagtgaCTTGTGCAATGGGACAGCCAAGTCCCAAAGAATCAtgaagaaagcagaaaatgaaaaattgcaatCACAGACAGGCTTTAAGAGGAGGAAATTAGTTGACTCTCCACCAACAAAAAAACCTGTGGAAAAGGTAGACACTGCTAGTGAGCCAGGTGTTTCAAAGACAACACCAAGAGAAACAAGAAGTTCTCCAACAGACAAATCAAAACAGGATAGTCCTgtagaaaagaagacaaagcAAGGGAAAACATATTTCAGTCAAAGGAAGGCAAATGCAATAGCTGCAAGTGTAAATCATAGACCAGAAAGTGCCAGAAGAAAAGCTGTATTGAATAAGTTAATGGCTAAAAAGCAAGAAAAGGCCACATTGAAGGCTGTCAATAATAAGAAAGtggtaaataaatcaactaAGAAGAAAGaATCTCctaagttaaaaaaagtaacaaaaggAACCAAAGCAGTGAAAGCAGTTACTCCAAAGGGCAAGGTCAAttccattcaaaaaaataacagaactCCATTAAAGCGACAGCCATCTAGGAATAATAAAGAAGAGTCaagagaagaagcagaagagacAAGTGAAACTGACAGTGTGTCTGGAGCCAAAGACCTGAAAAGcattgttaagaaaaatattgggAAATATAGGGAAATGAGAGAGCAACAAAAGTTAGCCATTAAATCCCAGCTTAGGATGAAGAAAAGCAAGATTCTTGTGGACAGTTTTAAACGTTCAAGGTCAGAACCTATTTCTAAGAACAAACAGAAGTACCTGAAACCATTAGAGAAAGGTTGGAGGAGGGAATTGGTTTTCAGAACGAACTGCGCCAAAGCTGGACAACAAGCTGATGTATACTATTTTCATCCTAACGGAAAGAAGCTCAGGTCATGTCgcgaaatttcagaaaatttaaCCCATGGTCTCACACTTGAGTATTTTACCTTTAGAAAAGAGCCCATAGGCTGTGGAGAACCCTCTGAAGTGATCAGAAATGCAAGATCCAATTCAAAATCTGCTTAG
- Protein Sequence
- MLDESKKVVKGSKQPVIDDCLMKPFALGWTREVVNRIITNNRNLNCDIYYISPSGKKIRSLTEIKSNLTDGLTPECFSFRKQPLGVNASYETIRDARVRRKESDLCNGTAKSQRIMKKAENEKLQSQTGFKRRKLVDSPPTKKPVEKVDTASEPGVSKTTPRETRSSPTDKSKQDSPVEKKTKQGKTYFSQRKANAIAASVNHRPESARRKAVLNKLMAKKQEKATLKAVNNKKVVNKSTKKKESPKLKKVTKGTKAVKAVTPKGKVNSIQKNNRTPLKRQPSRNNKEESREEAEETSETDSVSGAKDLKSIVKKNIGKYREMREQQKLAIKSQLRMKKSKILVDSFKRSRSEPISKNKQKYLKPLEKGWRRELVFRTNCAKAGQQADVYYFHPNGKKLRSCREISENLTHGLTLEYFTFRKEPIGCGEPSEVIRNARSNSKSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -