Pser001228.1
Basic Information
- Insect
- Polyplax serrata
- Gene Symbol
- bab2
- Assembly
- GCA_037055365.1
- Location
- JAWJWE010000001.1:15741868-15747143[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.4e-13 2.4e-10 39.4 0.0 1 39 446 485 446 489 0.91 2 4 1.4e-13 2.3e-10 39.4 0.1 1 39 500 538 500 541 0.95 3 4 1.4e-17 2.4e-14 52.2 0.0 1 45 555 600 555 600 0.97 4 4 4e-20 6.8e-17 60.4 0.1 1 43 607 650 607 652 0.96
Sequence Information
- Coding Sequence
- ATGTCAAGACAACACTACTGTTTAAGATGGAACAATTATCAGTCAAATATGACTTCAGTTTTTCATCAGTTACTACAGACTGAATCTTTTGTTGATGTGACATTATCTTGTAATGATTCATCACTAAAAGCACACAAGGTAGTTCTGTCAGCATGTTCGTCTTACTTTCAAAAGTTACTTATACAAAATCCCTGCAATCATCCTACAATCATCATGCCACCAGATGTACCATTCAATGATCTCAAAATAATCATTGATTTTGTCTACAGAGGAGAGATTGACGTTGATCAGACACAACTTCagtcacTTTTGAAAACGGCAGACCAACTTAAAATCAAAGGACTTTGCGAGGTGTCAGACAGTGGATGCCCAGGCAGCGACGCAGACAATTCAAGCTCGGATTTTAAAACTCCCATCAACCTGTTTTCGCCCGACTACCAAACGGATGAGAACacgaaaaattacaattatggTAACGTCCCACATTCGACGAGAGACAAAACTTTGACTCAATATGTCGAACTCTTTTCAGGGGCAACTGATAGTCAAAATCATCACATCAAACGTCAAGCAACTAAGAGGAAGAATTCACCTTTGACGAGCACACAGGGCGGAGGAAGAAGCAGTCCACTGCCAAAGAAGGGAGCGTCCTTATTGAAAAAGCCGGTACTTAAAGACAGGGCTGTCCAGAGTGACCCGACATTAGACGACAGCGGTATGAATGTTCCAGAAAATGGTCTCGACCAAAACTCCGCTGTTCATTCACAGAATGCGGTTACTGGAAGTATTAGTGATCCTATTCAAAGTAATGGTGAAAGAGTTCCTGAATGCATAACCGTATCAACTTCCACCGAAGATGATGAGAAGAACGTTCCGGTCGTTATCTTGGAGAGATCCGTGGGAACGGTCCCAATGATAGTTCACAATATGCAGACATCGCTGTCCCCGCAAATGGTTGTTGAGGGAGGCAACAGCAACACAAGCGTTCAGGGTGCTGTAGATAACACACCACCTGATGTTGACATTCCACCGGAGGCCCAACCGGCAGCTCCCAGTGCAACTTTGGTGGAAAATCTGGATTTAACTGAACACCATCAAGTGGAAACGATTGAACCAGATGAAGAGGAAACGGAACACgtgaaagtcaaatttgaaaCACTAAGATCGGTTGACCAAAGCGGTGATGCAATGGACATGGATCATTTGGATAGGAATCAAGATGAATCAGAGTCAATGCATACTATGATGATAACACCTGAATTACTTGGCCTTTTCCCCACTTCTTCTGGGAATTCAGATGGAGGTGAGACGGAAATAAAGGGGAACAAAGCTTGGACTCATGACGATATGGAATTGGCGTTGGACGCACTAAGAAATCATAATATGTCCCTGACAAAAGCATCTTCCACTTATGGAATTCCTAGCACAACTCTGTGGCAGAGGGCTCACAGACTTGGTATAGACACTCctaagaaagaaggaaatgcTAAGAACTGGACAGAAGACAATTTGAACAGTGCACTTGAAGCTCTTAGGACTGGAACAATTTCAGCAAATAAAGCGAGCAAAGCTTAtgGTATTCCAAGTAGTACATTGTACAAAATTGCAAGAAGAGAAGGTATAAGACTGGCAGCTCCATTTAATGCAGCCCCCACAACCTGGACCCAAGAAGATTTAGACAGAGCTTTAGAATCAATTAGGTCAGGCCAAGCAAGTGTACAGAGGGCTTCAGCTGAGTACGGTATTCCAACGGGGACTTTGTACGGTCGCTGTAAAAGGGAGGGCATAGAACTAAGTCGTAGTAATCCAACACCTTGGAGTGAAGATGCGATGGGAGAAGCTTTGGAGGCTGTCAGagTCGGTCAGATGAGTATTAACCAGGCCGCAATTCACTACAATTTACCTTACTCATCGCTCTATGGACGGTTTAAAAGGGGTAAATACGAAGCAGAGGACGGAAACAGTAATAACGGGGATCCGACCGGAAATCAAATGATGATGGTCAATTATCCACCGGAAATGCATCCGTTTCAGAGCGGTAGTTGA
- Protein Sequence
- MSRQHYCLRWNNYQSNMTSVFHQLLQTESFVDVTLSCNDSSLKAHKVVLSACSSYFQKLLIQNPCNHPTIIMPPDVPFNDLKIIIDFVYRGEIDVDQTQLQSLLKTADQLKIKGLCEVSDSGCPGSDADNSSSDFKTPINLFSPDYQTDENTKNYNYGNVPHSTRDKTLTQYVELFSGATDSQNHHIKRQATKRKNSPLTSTQGGGRSSPLPKKGASLLKKPVLKDRAVQSDPTLDDSGMNVPENGLDQNSAVHSQNAVTGSISDPIQSNGERVPECITVSTSTEDDEKNVPVVILERSVGTVPMIVHNMQTSLSPQMVVEGGNSNTSVQGAVDNTPPDVDIPPEAQPAAPSATLVENLDLTEHHQVETIEPDEEETEHVKVKFETLRSVDQSGDAMDMDHLDRNQDESESMHTMMITPELLGLFPTSSGNSDGGETEIKGNKAWTHDDMELALDALRNHNMSLTKASSTYGIPSTTLWQRAHRLGIDTPKKEGNAKNWTEDNLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTQEDLDRALESIRSGQASVQRASAEYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYEAEDGNSNNGDPTGNQMMMVNYPPEMHPFQSGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01251180; iTF_00362460; iTF_00362631;
- 90% Identity
- iTF_01251180;
- 80% Identity
- iTF_01251180;