Ccol007838.1
Basic Information
- Insect
- Columbicola columbae
- Gene Symbol
- bab2
- Assembly
- GCA_016920875.1
- Location
- JADMLL010000003.1:7710144-7715286[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.6e-13 9.6e-10 37.9 0.0 1 39 458 497 458 501 0.90 2 4 1.6e-13 3.3e-10 39.4 0.1 1 39 512 550 512 553 0.95 3 4 1.4e-17 3e-14 52.3 0.0 1 45 567 612 567 612 0.97 4 4 7.3e-19 1.5e-15 56.5 0.0 1 41 619 660 619 663 0.95
Sequence Information
- Coding Sequence
- ATGTCTAGACAACACTATTGCTTAAGGTGGAACAATTATCAGTCAAATATGACTTCAGTTTTTCATCAGTTGCTTCAGACTGAATCTTTTGTTGATGTGACATTATCTTGTAATGATTCGTCATTAAAAGCACACAAGGTGGTACTCTCAGCATGTTCATCATATTTTCAAAAATTGCTGATTCAAAATCCTTGCAATCATCCGACAATTATTATGCCACCAGATGTTCCATTCAATGATCTCAAAATAATCATTGACTTTGTCTACAGAGGAGAGATTGATGTTGATCAGACTCAGCTTCAGTCGCTATTAAAAACGGCTGACCAACTCAAAATTAAGGGCCTCTGTGAGGTGTCAGACAACAGCAGTGGGAGTGAAGCTGAGGGATCTTCTCCCGGCGATTTCAAAGCCAATCATAATCCGTTCGGAACTGAATATCAAACAGATGAAAGCGCGAAAATTTTAATTTTACTGGCAATGATAAAACAGTCGGATAGTCCACCGATTAGCAGTCAAGAAACTCTTGCCACTGTTAAGCAAACACTTTTCACTGCACCTGCTGAACCTCAAAATCATCACACCAAACGTCAAGCAGCCAAGAGGAAAAATTCTCCCTTAACAGCCACGACTGGAACTGGAAGAACCAGTCCCCTACCAAAGAAGGCCACTTCCATTTTGAAGAAACCTATTCTTAAGGATAGAGCAGTTCAAAGCGATCTGACCGACAATAGCGGTATGAATATGCCGGAAAATGGCCTAGATCAAGCCCCTGATCATTCGCAGAATTCTGCTTCTGGAAGTATTAGCGATCCTGTCAGACATGAACCACAAATTCAAAGCAACGGAGAAAGAGTTCCTGAATGTATAACAGTGGCAACCTCAACAGAAGATGATCAAAAAAATGTTCCAGTTGTCATCCTTGAAAGACCCGTGGCGACGGTGCCCATGATAGTTCATAATATGCCCGCAACCTTATCTCCACCAATGGTCGTAGAAAACAACAGCAGTACGAGCGTGCAGACCAACACTGATCACGCTCCTCCGGACGTCGACATACCTCCTGAAGCACAGCCCCCAGCCCCTAGCGCCACTCTGGTCGAAAACCTTGATCTCACCGAACAGCCTGAGCCTGAAGCAACGGAACCCGATGAGAACGACAGTGAACATGTTAAGGTGAAATTTGAAACTTTAAGATCAGTGGATCAAAGTGGTGATACTGTAGATATGGATAGTCATATGTCCGAAAGAAATCAAGACGAATCAGAGTCCATGCAGACAATGATGATAACTCCTGAATTACTTGGCCTTTTCCCCACTTCATCTGGAAATTCAGATGGAGGGGAATCCGACCTAAAAGGTTCCAAAGGTTGGACTCAAGATGATATGGAACTCGCACTGGATGCTCTCAGAAACCATAATATGTCTCTCACAAAAGCGTCTTCAACGTACGGCATACCGAGCACTACATTATGGCAGAGAGCACACAGACTTGGAATAGATACGCCGAAAAAAGAAGGAAACGCGAAGCATTGGACTGAAGACAATTTAAACAGTGCATTAGAGGCTCTTAGAACGGGTACTATATCTGCAAATAAAGCCAGTAAAGCCTATGGAATCCCCAGTAGTACTTTATACAAAATAGCAAGGAGAGAAGGAATCAGATTAGCCGCACCATTTAACGCAGCTCCAACTACTTGGACTCAGGACGACTTAGAAAGGGCTTTGGAATCGATTAGGTCTGGTCAGTCAAGCGTTCAAAGAGCTTCAACAGAGTATGGCATTCCCACTGGTACACTATATGGACGTTGCAAACGAGAAGGCATAGAATTAAGTCGAAGCAACCCAACACCTTGGAGCGAGGATGCGATGGGAGAGGCTTTAGAGGCTGTCAGGGTTGGACAAATGAGTATAAACCAAGCTGCTATTCACTATAACCTACCGTACTCGTCCTTATATGGTCGCTTTAAAAGAGGCAAATTCGACGCAGATGATGCAAATAGCAGTAACGGAGATGCATCTGGAAACCAAATGATGTTGGTCAACTACCAGCAAGAAATGCACCCTTATCACCCGGGCAGTTGA
- Protein Sequence
- MSRQHYCLRWNNYQSNMTSVFHQLLQTESFVDVTLSCNDSSLKAHKVVLSACSSYFQKLLIQNPCNHPTIIMPPDVPFNDLKIIIDFVYRGEIDVDQTQLQSLLKTADQLKIKGLCEVSDNSSGSEAEGSSPGDFKANHNPFGTEYQTDESAKILILLAMIKQSDSPPISSQETLATVKQTLFTAPAEPQNHHTKRQAAKRKNSPLTATTGTGRTSPLPKKATSILKKPILKDRAVQSDLTDNSGMNMPENGLDQAPDHSQNSASGSISDPVRHEPQIQSNGERVPECITVATSTEDDQKNVPVVILERPVATVPMIVHNMPATLSPPMVVENNSSTSVQTNTDHAPPDVDIPPEAQPPAPSATLVENLDLTEQPEPEATEPDENDSEHVKVKFETLRSVDQSGDTVDMDSHMSERNQDESESMQTMMITPELLGLFPTSSGNSDGGESDLKGSKGWTQDDMELALDALRNHNMSLTKASSTYGIPSTTLWQRAHRLGIDTPKKEGNAKHWTEDNLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTQDDLERALESIRSGQSSVQRASTEYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRGKFDADDANSSNGDASGNQMMLVNYQQEMHPYHPGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01250994;
- 90% Identity
- iTF_00362631;
- 80% Identity
- iTF_00362631;