Pvan003177.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Polypedilum vanderplanki
Gene Symbol
stc
Assembly
GCA_018290095.1
Location
CM031380.1:2730650-2733610[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 1.6 1.4e+04 -3.8 1.1 15 18 294 297 293 298 0.81
2 14 0.3 2.6e+03 -1.5 0.3 4 10 327 333 326 333 0.91
3 14 0.02 1.8e+02 2.3 10.5 4 14 341 351 339 356 0.88
4 14 3.1e-07 0.0027 17.6 12.1 1 19 392 410 392 410 0.96
5 14 2.2e-07 0.002 18.1 14.1 1 19 450 468 450 468 0.97
6 14 0.00033 2.9 8.0 10.5 4 18 516 530 509 531 0.87
7 14 2 1.8e+04 -4.4 2.0 5 10 558 563 558 563 0.91
8 14 0.023 2.1e+02 2.1 5.9 1 11 569 579 569 580 0.87
9 14 0.097 8.6e+02 0.1 1.7 3 10 583 590 583 590 0.93
10 14 1.2e-05 0.11 12.5 7.7 3 18 598 613 596 614 0.91
11 14 2 1.8e+04 -7.9 12.4 10 18 661 670 650 671 0.75
12 14 1e-07 0.00091 19.2 10.5 1 16 707 722 707 723 0.96
13 14 2 1.8e+04 -4.2 0.8 6 10 728 732 727 732 0.92
14 14 5.9e-05 0.52 10.4 9.8 4 18 741 758 739 759 0.88

Sequence Information

Coding Sequence
ATGTCGCCTGTATCAGGAGAAGAAAGTAGTGCAACTCAGTCAAATTTAAATGCCAACGCATCAGAATTTATTCCGATTATGATTAATGAAGAATCGACTCAATTAGcaacaacaaattcaattcattcaacTACTGGTGCTATtcccaaaaaattttataaaagtaacAATAATTATCGTCGTGATAAGTTTGATAGAAATCAAAGATGGAGATCTAATAATGGTAGTAGTAGTCAACGAAGAGAGACTTTTGCAGAACGTaataatagaaatgaaaatgctaATTTCGAACCATTAGAAAGTAAtaaccaaaataaaaagttctttgCTAATAATAAACCACCGAAACAAAATGATAGAATGAATGATCAAAATCAGTATGAAGGATCATCTCAAACAATTCAAAGACAAAATATTTCACGACAGATTAAAAATGCACAAATGTCAAATAATAAtagattgaaaaataataatcgaTATGGAGAAAATGAAGTGCTTAGTGAAAGACAATATTACAATCGTCGTAACAATAATTATGGTCGAAATTATAATGGAATTCGATCtaataatgaaaatcagaagAAAGAAGTTGAACAAAATCAACAAGAAGAAGTTAATGAAAAGCCAACTACAAAAAATCGTCCAAAAAAACGTGAACCGTTTAATCGTAAAAAGGATGAATCAAAAGCTTCAAGTGCTTCACAACGTGATCgattgataaaagaaattgaatcaaatacATTAGAGTGCATGATATGTTGTGAAAAGATTAAGTCTTATCAACCAATTTGGAGTTGCTCAAACTGTTATCACATTCTTCACTTATATTGTATCAAAACTtggatgaaaaattcaaaaaatgatgaaggtGAATGGAGATGCCCAGCATGTAATCAAATGACAAATCAAAAGCCTGGTgattatttatgtttttgtgGTAAACTTAAAAATCCAGCTGTAAATCGCAATGATCTAGCTCATTCATGTGGTGAAATGTGTATGAATCAAACACTTTGTCCACATCCTTGTCAATTAAAATGTCATCCAGGTCCGCATGAAATTTGTTATGCATCTGTTCTTAAAACATGTGGCTGtggaaaaacttcaaaaacttATCAATGCTCAATGAAAGCAGCTTTCGAGTGTGAATTAATTTGcgataagaaattaaattgttcaCTTCACAAATGCACTAAAATTTGTCATCAAGGACCTTGCAATGAATGCACTGAACAAATTGAATGTTCATGCTTTTGTGGtgctgaaaaaaaaattcttccatgCATAGTTGATAATTTAGACAGAGTTAAATATTCATGTGAAAAAGAGTGTGGAAAATTGTTAAGTTGCGGAAATCATACGTGCAAACAAAAATGTCATGAAGATGATTGTGGAAAATGCAAATTACTGCCAGAATTTGTACTTTGTTGTCCATGCACTAGAACACCAGTTAAAGAAGGATCGCGTACAAGCTGCATTGATCCGATACCAATCTGTGAGAATATTTGTAAGAAAGCACTTCGATGTGGGAAACTTTCATCGCCTCATCTTTGTCAAGCAAAATGCCATTTAAATGAGTGCCCTCCATGCAATCAGACATCAAATGTGAAATGTCGTTGTGGTCGAAAAGAGGAAAAGATTCCTTGTAAAGAATTAACTAATAGTGATTTACGATGTAAGAAGAAATgcaacaaatttaaatcttgTGGACGGCATAAGTGTCGCTTTGATTGCTGTATTGATCCTATTCACAAATGTACTCTAACTTGTAATAGACTATTAAATTGTAAGCTTCACAAGTGTCAACGAATTTGCCATATTGATAATTGTGCACCATGTTATCGAGTCAGTTTTGATGAACTTCGATGTGAATGTGGATTTACTGTAATTTATCCACCTGTTCCATGTAACACAAAGATTAGTGACTGTCCAAAGAAATGTACACGCACACATAAATGCAATCATCAAGTAATACATAATTGTCATTCAGAATCTGAATGCCCACCATGTGTATTTTTGACAAGTAAATTCTGTTATGGAAAACATGAAGAACGAAAGACAATTCCTTGCAACCAAGAGTCTTTCTGTTGTGGAATGCCATGCGGCAAATTATTGAAATGTGGTCGGCATACTTGTATTAAAACATGTCATCAAGGAGAATGTGAGAAAAAGGATGATTTTTGCAAGCAAAAATGTACAATGAAACGATTTGAGTGTGATCACAATTGTAATGCACAATGTCATGAAGGAAAATGTCCGGACAATATATCTTGTCGTGAAAAAGTTCAAGTTTCATGTGTATGTGGAAATCTCAAAGAATTCAAGACATGCGAACAAGTTGaatatgagaataaaaaacttcaaagaaTTCACATTACTATGCAAATGCAAGAAATGCAACAAAGTGATGGAATAACTGATCTTAAAACAATGCTTGGTGATTTCAAAAAGACTACGAAAATTCTTGAATGTAATGATGAATGCAAGACTTTAGAGCGAAATCGTCGTCTTGATATTGCATTCAAAGTTCAAAATCCAACACTTGCTTCTACACCTCGATTCGTTCCTACCTATAGTGATCACGTtcgaaattattataaaaaagatccaACTTTCGTTAATATGGTGCATGATAAATTGACTGAGTTAGTAAAATTAGCAAAAGAAAGTAAAGCTCCATATCGTTGTCATTCATTTCCTTCAATGAATCGTGATAAGCGTCATGTTATACATGACATGGCAGAATTATTTGGTATTGAAACGCAAGCTTATGATGCTGAACCTAATCGAAATATTGTTGCAACAGCTACACGAGAATATTGTTGGCTTCCATCAATGAGTATGGCTGAAATTGCTAGTCGCGAAAATGGAGCTCGTCGACCGCCATCAAatcaaacttttaaatga
Protein Sequence
MSPVSGEESSATQSNLNANASEFIPIMINEESTQLATTNSIHSTTGAIPKKFYKSNNNYRRDKFDRNQRWRSNNGSSSQRRETFAERNNRNENANFEPLESNNQNKKFFANNKPPKQNDRMNDQNQYEGSSQTIQRQNISRQIKNAQMSNNNRLKNNNRYGENEVLSERQYYNRRNNNYGRNYNGIRSNNENQKKEVEQNQQEEVNEKPTTKNRPKKREPFNRKKDESKASSASQRDRLIKEIESNTLECMICCEKIKSYQPIWSCSNCYHILHLYCIKTWMKNSKNDEGEWRCPACNQMTNQKPGDYLCFCGKLKNPAVNRNDLAHSCGEMCMNQTLCPHPCQLKCHPGPHEICYASVLKTCGCGKTSKTYQCSMKAAFECELICDKKLNCSLHKCTKICHQGPCNECTEQIECSCFCGAEKKILPCIVDNLDRVKYSCEKECGKLLSCGNHTCKQKCHEDDCGKCKLLPEFVLCCPCTRTPVKEGSRTSCIDPIPICENICKKALRCGKLSSPHLCQAKCHLNECPPCNQTSNVKCRCGRKEEKIPCKELTNSDLRCKKKCNKFKSCGRHKCRFDCCIDPIHKCTLTCNRLLNCKLHKCQRICHIDNCAPCYRVSFDELRCECGFTVIYPPVPCNTKISDCPKKCTRTHKCNHQVIHNCHSESECPPCVFLTSKFCYGKHEERKTIPCNQESFCCGMPCGKLLKCGRHTCIKTCHQGECEKKDDFCKQKCTMKRFECDHNCNAQCHEGKCPDNISCREKVQVSCVCGNLKEFKTCEQVEYENKKLQRIHITMQMQEMQQSDGITDLKTMLGDFKKTTKILECNDECKTLERNRRLDIAFKVQNPTLASTPRFVPTYSDHVRNYYKKDPTFVNMVHDKLTELVKLAKESKAPYRCHSFPSMNRDKRHVIHDMAELFGIETQAYDAEPNRNIVATATREYCWLPSMSMAEIASRENGARRPPSNQTFK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01249746;
90% Identity
-
80% Identity
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