Pvan001930.1
Basic Information
- Insect
- Polypedilum vanderplanki
- Gene Symbol
- nfxl1
- Assembly
- GCA_018290095.1
- Location
- CM031380.1:1152974-1157414[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.67 5.9e+03 -2.6 0.3 14 18 100 104 100 105 0.76 2 16 0.63 5.5e+03 -2.5 1.5 14 19 153 158 153 158 0.86 3 16 0.73 6.4e+03 -2.7 0.3 4 10 189 195 189 195 0.87 4 16 1.7e-06 0.015 15.3 14.2 1 19 203 220 203 220 0.95 5 16 1.1 9.7e+03 -3.3 1.8 5 10 245 250 245 250 0.94 6 16 1.5e-05 0.13 12.3 14.3 1 19 256 273 256 273 0.97 7 16 2.6e-05 0.23 11.5 14.3 1 19 308 326 308 326 0.99 8 16 5.3e-07 0.0047 16.9 11.5 1 18 363 379 363 380 0.98 9 16 2 1.8e+04 -5.9 13.2 3 18 416 430 414 431 0.88 10 16 9.3e-11 8.2e-07 28.9 11.4 1 18 440 457 440 458 0.97 11 16 0.35 3.1e+03 -1.7 1.0 5 10 486 491 485 491 0.95 12 16 0.14 1.2e+03 -0.4 9.2 10 19 506 515 504 515 0.92 13 16 0.42 3.7e+03 -1.9 5.5 3 12 525 534 524 534 0.88 14 16 4.5e-06 0.039 13.9 8.1 1 12 605 616 605 616 0.97 15 16 0.32 2.9e+03 -1.6 11.1 3 18 645 662 644 663 0.71 16 16 0.00065 5.7 7.0 11.3 1 18 714 733 714 734 0.87
Sequence Information
- Coding Sequence
- atgcctCCAATCAAAGAAAAGACTTCAAAAAAtaccaacaaaaaaaataacaacgcAAAATTcgaagaaattcaaaagaaaaatcaagagATTTTGAAAGAACGATTTGGCAAAAGAATTTCAGAAAGCTCCGATGACGAGGATGGtaataaagttgaaaaatcaaaaattgagagcctctttaaaaattatcaaggcAATGAAAGTGACGTGGCGCGGATTCAGCAATATTTTGATGGTGAAAATCTTGATTGTCTTATTTGCATTCGTTCAGTTAAAgcaaatgataaaatatggaATTGTGGAACATGCtatctttcttttcatcttctttgCATTCAGAGATGGGCAAATGATTCAATGAATCTAAAACGATTGTGGCATGATAATCAACCAGTTGGTTATTATGATAATCAAGGAActtatattaaaaagaaagaactgAAATTATTTTGGGATTGTCCTAATTGCAGGACAGAATATAAAGAGGATGAAATTCCAAgacattatttttgttattgtcaaaaagaaattgatccACCAAATCAAGAATGGCTAATTCCTCATAGTTGTGGCATGGTATGCCAAAAACCATTGCCTGATCTTTGTAGTCACAAATGCACAATACTTTGTCATCCAGGAAAATGCCCAAGTTGTCCACAAACAATTCAAGTTAGTTGCAAATGTAAGAAATCGCCATTAAAAACAATAAGATGCAGTCAACAATTCTGGACTTGTTCAGAAAAGTgtgataaaaaactttcttgtGGCATTCACAAGTGTGAAGGTATTTGTCATGAAGAATGCCCACCTTGCAAAGAGAAGAGTATCAAAAGATGCTTCTGTGGTCAAAAGACAAAAGAGATTAAATGCGAACAAGAAGCATGGAGTTGtgataaaatttgcaaaaaaccTCTTTCATGTGGAAATCATTTTTGCGAGAAAAAATGTCATGGAAATGAATGTGGTCAGTGTCCTTTTGGATTCGAAAGAAGCTGCTTTTGTggcaaacaaatttttgaagtgTTAAATTGCAATGAACAACAGCTTGATTCCTGTGGTGACACTTGCCTTAAACAATTGCCTTGCGGTCATCAATGCTTTTCTCGATGTCATAAAGGAGAATGTGATCCGTGTATGGaacatattgaaaaaaaatgcaGATGTGGATCAATGTCGAAAGTTTTTACATGCTCCAAAGAATTACTTTGTGAAACAAAATGCAATAGACAAAAAGCATGCAAGAAACATTCCTGTAAAGCGAGATGTTGTGTTGATTGTTTACCTTGCAATCTGGTATGCGGAAAAATGTTAACTTGTGGAAAACATAAATGTgaagctcTTTGTCATTCAGGAAATTGTTATCCGTGcaatgaaaagcaaaaaatttcatgtcgTTGTGGttcaacttcaatttttattcgttGTGGAAAAGCTAGCAAACATAAAACACCCAAATGCAAGGaactttgtaaaatttcatccAAATGCCATCATGAACCACTGCCACATCATTGTCATATTGGAAATTGTCCTGGATGCAAACAAATTTGTAATGAACCTTTGTCTTGTGAACATAAATGCTTATATGAATGTCATGATTATGTTAAGATAAtagtgaaagataaaaattttgttcctgCTGGACCATGGGATGTTCAAGAACAAagaattgaatataaaaaattaccgCATGCACCTTGTAAGACACAAGTTGAAGTAACATGTCTTGGCGGACATGAAACAGTTATGCTGAATTGTTCAAATGCAAGAGTAAGTTCATGTGGAAGAATCTGTGGTAGAATGCTTTCGTGCGGAAATCACAAGTGTCAAAAAGCTTGTCATGAAGTTAGTGATTTAAATAACGAGTTGAGAGATGAAAATTGTGAAGATTGTGAACTGCCATGCATGAAAGAAAGACCAAAAGGATGTACACACCAATGTAGTAGATCATGTCATGATTCAACAAAACCTTGCAAGAAATGTGTcgttcaaataaaatcaaaatgtttttgtggCTTGACAGAAGTTTATTACAGATGTTGTGATGTTTATAAAAGAGACATTGATGATGCAACAAGACAAAATCTTCTTGAAAAATATCGTTGTTGTGGAGCACGATGCATTAAACTTTATCCATGTGGTCATCAATGCACAATGAATTGTCATTATGGCGAATGTCAAGGAGCTGAAAATTGCAAGAAGAAAGTCAAACTTTTATGTTCATGCAAAAATCGTCGAGTTGAATTTTCTTGTGATAAAATTCGAGCTGAAAATATTACATTTGCTAATTGCAATGAAGACTGTGATGAGAAAAAACGACTATTGGATgaagaaaaacagaaaaaattggaaaaacaGCGAGcgattgaagaagaaaagaatagaAGAGAATTGgaagaatatgaaaaaaaaattggacCAAAGAAatacaaagagagaaaacagAGGGTTGTTGAAGAGAAGAagagcaattttaaaatgattattggTATATCTACagcaataattttgataatagcaattcttttgtattttatgctttacaaaatttaa
- Protein Sequence
- MPPIKEKTSKNTNKKNNNAKFEEIQKKNQEILKERFGKRISESSDDEDGNKVEKSKIESLFKNYQGNESDVARIQQYFDGENLDCLICIRSVKANDKIWNCGTCYLSFHLLCIQRWANDSMNLKRLWHDNQPVGYYDNQGTYIKKKELKLFWDCPNCRTEYKEDEIPRHYFCYCQKEIDPPNQEWLIPHSCGMVCQKPLPDLCSHKCTILCHPGKCPSCPQTIQVSCKCKKSPLKTIRCSQQFWTCSEKCDKKLSCGIHKCEGICHEECPPCKEKSIKRCFCGQKTKEIKCEQEAWSCDKICKKPLSCGNHFCEKKCHGNECGQCPFGFERSCFCGKQIFEVLNCNEQQLDSCGDTCLKQLPCGHQCFSRCHKGECDPCMEHIEKKCRCGSMSKVFTCSKELLCETKCNRQKACKKHSCKARCCVDCLPCNLVCGKMLTCGKHKCEALCHSGNCYPCNEKQKISCRCGSTSIFIRCGKASKHKTPKCKELCKISSKCHHEPLPHHCHIGNCPGCKQICNEPLSCEHKCLYECHDYVKIIVKDKNFVPAGPWDVQEQRIEYKKLPHAPCKTQVEVTCLGGHETVMLNCSNARVSSCGRICGRMLSCGNHKCQKACHEVSDLNNELRDENCEDCELPCMKERPKGCTHQCSRSCHDSTKPCKKCVVQIKSKCFCGLTEVYYRCCDVYKRDIDDATRQNLLEKYRCCGARCIKLYPCGHQCTMNCHYGECQGAENCKKKVKLLCSCKNRRVEFSCDKIRAENITFANCNEDCDEKKRLLDEEKQKKLEKQRAIEEEKNRRELEEYEKKIGPKKYKERKQRVVEEKKSNFKMIIGISTAIILIIAILLYFMLYKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01249745;
- 90% Identity
- iTF_01249745;
- 80% Identity
- -