Pvan002450.1
Basic Information
- Insect
- Polypedilum vanderplanki
- Gene Symbol
- -
- Assembly
- GCA_018290095.1
- Location
- CM031380.1:18138200-18140653[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1 6.1e+03 -2.6 0.0 34 45 38 49 35 54 0.66 2 10 0.13 7.4e+02 0.3 0.0 22 52 280 310 277 311 0.82 3 10 0.0024 14 5.9 0.0 22 46 308 332 304 335 0.90 4 10 0.00017 0.98 9.6 0.1 21 44 335 358 331 361 0.92 5 10 0.0044 26 5.0 0.1 21 45 363 387 359 395 0.89 6 10 0.0036 21 5.3 0.3 21 46 419 444 412 450 0.83 7 10 0.00024 1.4 9.1 0.1 23 47 449 473 442 479 0.82 8 10 0.0045 26 5.0 0.1 22 45 504 527 499 534 0.88 9 10 0.048 2.8e+02 1.7 0.0 21 46 531 556 527 562 0.84 10 10 0.00035 2.1 8.5 0.1 21 45 559 583 555 589 0.91
Sequence Information
- Coding Sequence
- ATGCTTGCAAACAATTCTCAGCAAAAGCAAATAATTCTTCCAGTCTATCCAGCAGTAATTATATCAGGACAAAAACTCAATACGTCCGCATCTGCAGCAACAGTGATTGGTATTGAACAATCTCAGAATCAAAAATGTCACATTTGTCAAAAAGATTTTCCATCGATGATTGCCTTTCAAAATCACGTGAAAGAGCAGCATCTGGATGGAAAAGTTTATCGAAATATAATTGCTGTTTCGACAGTCAATAGTCCAGTAACAATGATACCCGCACAAGTTGCAAATGTTCAGCAGCAACAATACCAAATTGCGACAACAAATACACCAGTTAAATTGGAAAAGGATTATAATCATTCTAAAAGTCACACTATACTACACACGTCTGATGTTCTTAAACAAACCTATCAAACGACACCGGCTAATTTTTCACAAGTTAGTGTCAACGTAACGCCCGTAATTCAACATATTCCAATACAACAGCCACAACAAATAAGTAACAATGCTCGTGATAAAGAAAAGCCAAATATTGTGCAAGTCTTAAAACAAAGTCCTGTTGAATATCATATTCAACAGCAAGAACATGCTGCAATGGTTGTTGCACAAATGAATCAAAAGTCTGGAATAACGAGTCCTTTTCTTAATAGTACTATTAAATATGAATTACATGGACAGCCAGTTCAATTAGTAACTGAAGTTTTTCCACACACACTTATAACTGAGGCAGCAAAGTCGGATGATCTCACATCTCAGTCGTCAGTTTCTTCTGTAGCTTCCTCCGTAAATAACCAAACAACAACTACAACTACTGGTCCAGTTTTAAGCAATGGTGAAACTATGGAAAAACAACATAAATGCTTaatttgtgataaattttttactactgTCGCCAATTTAAATATGCATTTGAAGGTTCATTCTGGAGATAAACCCTATAAATGTTCCGTTTGTGGAAAAGGTTTTATACAAAGTAATAATCTATCAACACATTTAAAAGTTCACacagGTGAACGTCCACACTCATGTTCGATTTGTGGCAAAAGATTTTCacaatcaaataatttaaagactCACATAAGGACACATACagGTGAAAAACCATATCGATGTAGCTTAtgtgaaaaatcatttaatcaaaaaaataacttgACTACTCATCTTCGAACTCATTCTGAATACCATCCTAGTAGTTGCAGCATGTGCAAGcaaaacttttcatcatttaatgaattatttaatcaCATGCGACAACATGCAGAAGAAAAACCACATATTTGTACAATCTGTAATAAAGTATTGAGTTGCCAGAATGATCTCAATGAGCATATGAAACAACATACACAACCGAAGCCATATAAATGTGATATTTGTCAAAAACAATTTACgcaatcaaataatttgaagaCGCATATTAAAACTCATATTTATCAAGATCCCTATAAATGCACAATGTGCACAAGATCTTTTCAGGATCAAGAAGAATACACAATGCATATTCGAGTTCATACCTTAGATAAACCATACGAATGCACTTACTGCAAgaagaaattcattcaaagTAACAATTTAAAGACTCATTTACGTACACATACAGGTGAACGACCATATAAGTGTTCAACGTGTGGGAAATCATTCAATCAAAAGaataatttaaatactcATAATCGAGTTCATACTGGTGAAAAACCATTCGAATGTCATCTTTGTGATCGCCGATTTAATCAAAGcaacaatttaaataaacatctTAAAACACATGGACAAGAAAAAGATTTACCAAGAGCGATGGAAAATGAAATGGACAAATTAATGAATACAGTCATCATGTCACAGCAACAAAACTAA
- Protein Sequence
- MLANNSQQKQIILPVYPAVIISGQKLNTSASAATVIGIEQSQNQKCHICQKDFPSMIAFQNHVKEQHLDGKVYRNIIAVSTVNSPVTMIPAQVANVQQQQYQIATTNTPVKLEKDYNHSKSHTILHTSDVLKQTYQTTPANFSQVSVNVTPVIQHIPIQQPQQISNNARDKEKPNIVQVLKQSPVEYHIQQQEHAAMVVAQMNQKSGITSPFLNSTIKYELHGQPVQLVTEVFPHTLITEAAKSDDLTSQSSVSSVASSVNNQTTTTTTGPVLSNGETMEKQHKCLICDKFFTTVANLNMHLKVHSGDKPYKCSVCGKGFIQSNNLSTHLKVHTGERPHSCSICGKRFSQSNNLKTHIRTHTGEKPYRCSLCEKSFNQKNNLTTHLRTHSEYHPSSCSMCKQNFSSFNELFNHMRQHAEEKPHICTICNKVLSCQNDLNEHMKQHTQPKPYKCDICQKQFTQSNNLKTHIKTHIYQDPYKCTMCTRSFQDQEEYTMHIRVHTLDKPYECTYCKKKFIQSNNLKTHLRTHTGERPYKCSTCGKSFNQKNNLNTHNRVHTGEKPFECHLCDRRFNQSNNLNKHLKTHGQEKDLPRAMENEMDKLMNTVIMSQQQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00319909;
- 90% Identity
- iTF_01250350;
- 80% Identity
- iTF_01250350;