Pvan002475.1
Basic Information
- Insect
- Polypedilum vanderplanki
- Gene Symbol
- -
- Assembly
- GCA_018290095.1
- Location
- CM031380.1:33690014-33695615[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 7.5e-05 0.0035 17.7 0.2 3 23 52 73 50 73 0.94 2 14 3e-05 0.0014 19.0 1.1 1 23 79 102 79 102 0.96 3 14 4e-05 0.0018 18.6 3.7 2 23 109 130 108 130 0.97 4 14 0.007 0.32 11.5 1.7 1 23 135 158 135 158 0.94 5 14 0.00012 0.0057 17.0 2.7 1 23 175 197 175 197 0.97 6 14 0.00052 0.024 15.1 0.6 2 23 216 237 215 237 0.96 7 14 1e-05 0.00048 20.4 2.9 3 23 344 365 342 365 0.95 8 14 0.015 0.69 10.5 0.4 1 23 373 395 373 395 0.97 9 14 3.2e-05 0.0015 18.9 1.7 2 23 402 424 401 424 0.95 10 14 0.00088 0.04 14.3 6.6 1 23 435 457 435 457 0.96 11 14 0.0077 0.35 11.4 0.2 1 23 463 486 463 486 0.92 12 14 0.00016 0.0072 16.7 2.9 1 23 492 514 492 514 0.98 13 14 0.001 0.048 14.1 1.3 2 23 524 545 523 545 0.98 14 14 0.0003 0.014 15.8 2.8 1 20 550 569 550 571 0.96
Sequence Information
- Coding Sequence
- ATGCtaaaatcactttttaaattaatttttaggaaaaaattgaaaatttcgagGGCATGCTACTTAGAAAAAGTTTCGAATCTTTTCGAACAAACTCTTTCGAATGTGTGTAGTGTAAAGTCGACTgcTATGGAAGTTACATCCTCAACAATATGTGACAATTGTGGAAAACAATTTTCGAATATTTATACATTAAATGCTCACGTAAAGCAAGTTCATGAGCTAAAAAGGCCTTTTAAATGCAGTATGTGTGAGCAATCTTTTGCAACAAAAtacaaAGTGCAGCGACACATTAAAGGAATTCATTCAGATGAAAGATTGATGAGTTGTGATGTTTGTGGACATAGTTTTAAGACTAGAGAAATGTTATTAAAACATCATAGAATTCATTTTAAAGGACCATTTTCATGCGATGTTTGTGGAgaagtttttaaatacaaaGCAGGTAGAGATCatcattataaattaaaacatgaaattcGACAACCACAAGAACAGAAAGAAATTACACAAAAGCAACTTTATGAATGCGAATTTtgccataaaatttataaaaatttaaaatcacttCAGACGCATAtagaaaatcattcaaaagGTAATGAAGAAGCCaaagttaaaaattctaatacaAATGAACGACTAGTCTgttatttatgttttaaagaatttaaaaataaaaaagattttgaaattcacATTGCATCACATGAGgaagaatataaatttgatgaaattattattgaagaaaGAATAGAAGATTTTGAAGTGGAAAGAGACAGCAATTTTATCGCAAATGATgaagataattttaatcaagaaaCAGAAGAggagaatgaaattatttttgaagagACCGAAATTATTATAGCGAATGAAAATGTTAcacaagaagaagaatttattgGCCAGAACGAAAATATTTCGTCATTTTCTATCAATAACATAAACAGCAAAGATCCCGAAGAAAATTCCccgaaaaatgaaaatagtcAAAACAAAAAGATGTCATCGgctgaaaaaataatttgcgaTATGTGCGGTacactttttaaaactaaatctCACCTAAAACGACATTTGCAAAGAAAACAtgaagataagaaaaattataaattcgaATGTCAAGAATGTTCTGCGATTTTTTTACTCCGATACGACCTTCAAAGGCATATGGTGAAGCACAATTCTTTAAGAGATTGTGAATGTTCTTTAtgtaataaaaagttcaaaactAAAGCCTCACTCGATgtccatataaaaataattcatgacGAAAATCGTATGAACCtggaaaaacaatttttgtgcaATATTTGTGATCGCTCGTATTTTCATAAGCGCCACCTTGATTATCACATGAGGAAACATACCGACGATAGAAGGTATGCTTGTAAAAAATGCGATAAAACTTTCCTCTATTCCGATGCGGTTAAATGGCATGCAATACGTGTTCATAAAGAATTGGCACCTTTTGTCTGTAATATTTGCtcaagaaaattcattcatgagAAAACATTTAATTCACACATACGAGAACATGAACCAAACACGGGAAGTTTAACAGTCACGTGTCCAATTTGTAGTAagaaaatatcagaaaaaCGGCATCTTCCTCGTCATATTCGAACTCATTTAAAAAAGGGATTCACCTGTCATCTTTGTAATGAATCATTTAAAGAGAGATTTCAGCTCACAAAACATATTGTACATTGCGAGAATAAGGATGATAAAAATGTGGAAGTTATTTATGAAACAATTGttgaataa
- Protein Sequence
- MLKSLFKLIFRKKLKISRACYLEKVSNLFEQTLSNVCSVKSTAMEVTSSTICDNCGKQFSNIYTLNAHVKQVHELKRPFKCSMCEQSFATKYKVQRHIKGIHSDERLMSCDVCGHSFKTREMLLKHHRIHFKGPFSCDVCGEVFKYKAGRDHHYKLKHEIRQPQEQKEITQKQLYECEFCHKIYKNLKSLQTHIENHSKGNEEAKVKNSNTNERLVCYLCFKEFKNKKDFEIHIASHEEEYKFDEIIIEERIEDFEVERDSNFIANDEDNFNQETEEENEIIFEETEIIIANENVTQEEEFIGQNENISSFSINNINSKDPEENSPKNENSQNKKMSSAEKIICDMCGTLFKTKSHLKRHLQRKHEDKKNYKFECQECSAIFLLRYDLQRHMVKHNSLRDCECSLCNKKFKTKASLDVHIKIIHDENRMNLEKQFLCNICDRSYFHKRHLDYHMRKHTDDRRYACKKCDKTFLYSDAVKWHAIRVHKELAPFVCNICSRKFIHEKTFNSHIREHEPNTGSLTVTCPICSKKISEKRHLPRHIRTHLKKGFTCHLCNESFKERFQLTKHIVHCENKDDKNVEVIYETIVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01249348;
- 90% Identity
- -
- 80% Identity
- -