Ppem012672.1
Basic Information
- Insect
- Polypedilum pembai
- Gene Symbol
- -
- Assembly
- GCA_014622435.1
- Location
- JACWBX010003439.1:127373-129207[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 6.8e-05 0.0031 17.8 0.2 3 23 8 29 6 29 0.94 2 14 6.4e-06 0.0003 21.0 1.4 1 23 35 58 35 58 0.96 3 14 3.6e-05 0.0016 18.7 3.7 2 23 65 86 64 86 0.97 4 14 0.0055 0.25 11.8 2.1 1 23 91 114 91 114 0.94 5 14 6.9e-05 0.0032 17.8 2.5 1 23 131 153 131 153 0.97 6 14 0.00092 0.043 14.3 0.4 2 23 172 193 171 193 0.96 7 14 1.8e-05 0.00083 19.6 2.4 2 23 304 326 303 326 0.96 8 14 0.032 1.5 9.4 3.7 1 23 334 356 334 356 0.97 9 14 2.7e-06 0.00012 22.2 0.7 1 23 362 385 362 385 0.97 10 14 0.023 1.1 9.8 9.5 1 23 396 418 396 418 0.99 11 14 0.0069 0.32 11.5 0.2 1 23 424 447 424 447 0.92 12 14 0.00043 0.02 15.3 2.9 1 23 453 475 453 475 0.98 13 14 0.00036 0.017 15.5 1.3 2 23 485 506 484 506 0.98 14 14 0.00023 0.01 16.2 3.2 1 21 511 531 511 532 0.95
Sequence Information
- Coding Sequence
- ATGGAAACGTCTTCAACAATATGTGATAATTGTGGAAAACAATTTTCAAATATTTATACATTAAATGCACATGTTAAGCAAGTTCATGAGCATAAAAAGCCTTTCAAATGCAGTATGTGTGACAAAAATTTTGCAACAAAATATAAAGTACAGCGACATATTAAGGGAATTCACTCAGATGAAAGATTAATGAGTTGCGATGTGTGTGGACATAGTTTTAAGACAAGAGAAATGCTGCTTAAACATCATAGAATTCATTTCAAAGGACCATTCACTTGCAGTGTCTGCGGAGAAGTATTTAAATATAAAGCTGGAAGAGATCATCATTATAAATTAAAACATGAAACTCGACAATTACAAGAACAGAAAGAAATTACACAAAAACAACTTTATGAATGCGAATATTGTCATAAAATTTATAAAAATTTAAAATCACTTCAAACTCATGTAGAAAATCATTCTAAAGGAGTGAAAGAAGTCAAAACCAAAAGTTCAGAAACAAATGAGCGACTAGTCTGTTATTTATGTTTTAAAGAATTTAAAAGTAAACAAGAATTTGAAGTTCATATTGCATCACATGAGGAAGAATATAAATTCGATGAAATTATTGTTGAAGAAAGATTAGAAGATTTTGAAGTGGAAAAAGACAGTAATTTTAAAGCAAGTGATGAAGCAAATTTTTATCAGGAAGAAAAAAAGAAGCAGGAGGAGGAGGAGGAGGAAGAAGAGATTAATTTTGAAGAGGCCGAATTTATTATAAGTGATGAAAATATTACGCAAGAAGAATTTATACGCCAGAACGAAGATTGTTCGCCAATTTCAATCAATAACATCAGCCAAAAAGATCCCGAAGAAAATTCCCCGAAATATGAATTTAATAAAAACAAAAACACATCGCCTGAAAAAATTGTTTGTGATATATGCGGATCATTGTTTAAAACTAAATCCCACCTTAAGCGGCACTTGCAAAGAAAGCATGAAGATAAGAAAAATTATAAATTCGAATGCCACGAATGTTCTGCACATTTTCTGCTTCGATATGACCTTCAACGACATATGGTGAAGCACAATTCTGTAAGGGATTATGAATGTTCATTTTGTAATAAAAAGTTCAAAACTAAAGCCTCACTTGATGCACACATAAAGATAATTCATGACGAAAATCGTATCAACCTAGAAAAACAATATAAATGTAATATCTGTGATCGTTCGTACTTTCATAAGCGCCACTTTGATTATCACTTCAGGAAACACACGGACGACCGGCGATATGCTTGCAATAAATGCGATAAGACTTTTCTTTACTCTGATGCGGTAAAATGGCATGCAATACGCGTACATAAAGAATTGGCACCTTTTGTCTGTAATATTTGCTCAAGAAAATTCATTCACGAGAAGACATTCGATTCACATATGAGAGAACATGAGCCAAACACAGGAAGTTTATCAGTCACGTGTCCAATCTGTAACAAGAAAATATCAGAAAAACGACATCTTCCACGTCACATTCGAACTCATTTAAAAAAGGGATTCACTTGTCATCTTTGTAACGAGTCATTTAAAGAGAGATTTCAGCTTACAAAACATATTTTACATTGCGAAAGTAAGGATGATAAAAATGTAGAAGTAATTTATGAAACAATTGTTGAATAA
- Protein Sequence
- METSSTICDNCGKQFSNIYTLNAHVKQVHEHKKPFKCSMCDKNFATKYKVQRHIKGIHSDERLMSCDVCGHSFKTREMLLKHHRIHFKGPFTCSVCGEVFKYKAGRDHHYKLKHETRQLQEQKEITQKQLYECEYCHKIYKNLKSLQTHVENHSKGVKEVKTKSSETNERLVCYLCFKEFKSKQEFEVHIASHEEEYKFDEIIVEERLEDFEVEKDSNFKASDEANFYQEEKKKQEEEEEEEEINFEEAEFIISDENITQEEFIRQNEDCSPISINNISQKDPEENSPKYEFNKNKNTSPEKIVCDICGSLFKTKSHLKRHLQRKHEDKKNYKFECHECSAHFLLRYDLQRHMVKHNSVRDYECSFCNKKFKTKASLDAHIKIIHDENRINLEKQYKCNICDRSYFHKRHFDYHFRKHTDDRRYACNKCDKTFLYSDAVKWHAIRVHKELAPFVCNICSRKFIHEKTFDSHMREHEPNTGSLSVTCPICNKKISEKRHLPRHIRTHLKKGFTCHLCNESFKERFQLTKHILHCESKDDKNVEVIYETIVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01250364;
- 90% Identity
- -
- 80% Identity
- -