Pvan014552.1
Basic Information
- Insect
- Polypedilum vanderplanki
- Gene Symbol
- -
- Assembly
- GCA_018290095.1
- Location
- CM031382.1:11371011-11373822[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0029 0.13 12.7 0.0 3 23 105 126 104 126 0.94 2 17 2.9e-07 1.3e-05 25.3 2.9 1 23 131 153 131 153 0.97 3 17 0.0042 0.19 12.2 0.4 2 23 160 181 159 181 0.96 4 17 0.00035 0.016 15.6 0.9 1 23 185 208 185 208 0.90 5 17 0.34 16 6.2 0.8 3 23 216 237 214 237 0.82 6 17 0.00097 0.045 14.2 0.5 1 23 246 269 246 269 0.93 7 17 3.3e-06 0.00015 22.0 1.9 1 23 275 297 275 297 0.98 8 17 0.04 1.8 9.1 0.3 2 21 303 322 302 323 0.93 9 17 0.00035 0.016 15.6 0.2 1 23 450 472 450 472 0.98 10 17 0.032 1.4 9.5 4.5 2 19 479 496 478 501 0.90 11 17 0.00029 0.013 15.9 1.1 1 23 513 535 513 535 0.98 12 17 0.0097 0.45 11.1 2.1 1 23 541 566 541 566 0.97 13 17 0.0038 0.18 12.3 3.5 1 23 572 595 572 595 0.93 14 17 0.018 0.84 10.2 0.2 1 23 633 656 633 656 0.91 15 17 0.0014 0.065 13.7 0.4 1 23 665 687 665 687 0.91 16 17 0.0011 0.052 14.0 2.1 1 23 693 715 693 715 0.96 17 17 4.4e-05 0.002 18.5 1.2 1 23 720 742 720 742 0.98
Sequence Information
- Coding Sequence
- atgtcacaaattGGACAGGAGCAGCACTATAAAGTGATACAAGTCTTTCAGCAACAAGATGTAATTACAGAGGAAGTTGATTTGATCGAATATGAGCCAGAAGAAGGTGAAGGTGGCGAAGTAGTTTATGAGCTTGTAGAATTGGCACAACCAAGTGTAGAAATTAAAACTGGACTCTATGATAAAAGTATAAACGATAATAAATTTCGTTGTGCCAATCGAGTATGTAAAAGGAGAAATATTGTGTACGATACAAAAGAAGAACTTGATGTTCATAATGAAGTGCATATTGAGCAGTATCGTAATGCAATTTGTCCCATTTGCAACAAAGAACTTGCAAATTCAGCCAAGCTTGAAGTTCACATCGAACTTCGCCATACACCACGACATTTTACTTGTGATCAGTGCGGCAAAGTTTTTCGTAGCAAGGATAATTTGAGATTGCATATGTCACAtcacagaaaatattttcatgttgaATGTAAAGCTTGTGGACGTGGATATAAAAGTATTCAATCATTGCGTTATCATTTGAGACAACATTTTGAGCATCATCAATGTGAGACTTGTGGAAAAGtctttgaacataaaaaattgctcCTTGGTCATGTAGCAGCAATGCATAATCAAGATTTACAAGTTCATTGTCGTTATTGTACGAGGACTTTTGCAAGAAGTGATGTTAGAGATGCTCATGAAAGAGACATTCATAAAAATGGAGCTGTAACTTCACACTTTAAATGCAATGAATGCACAGAATCTTTTGATCTTCGTGATGACTTAATGAGTCATaagattttaaatcattttagtGGAGTTATTCATACTTGTGaggAATgtggtaaaaatttcaagaaaaaatccCTTTTGGATCTTCATATGAATGTTCATCGAAAGAAGTCAATTTCATGTGATGTTTGTAAGcaaatgtttacatttataaCAGGACTGAATAAACATAAGAAATTGGGAAGATGTAAAGGACCACCATCAGAGTCACTTGCTGATGTTTTGACCAAAGAAGAAATTGCACGAATTGCTAAAGCTCAATTGCAAGAAATTACAGTAAATCCAAAAAAGGATGttgaagaagaggaagaaacTTTTGAGCCAGAAATTAcaattaagaaagaatttacagtaaaaaagaaagcagGACGAAAACCAAAagttgagaaaattgaaatctcaAAAGTTACTGAAGAACCAATGGAAGTTTATGAAGTAGAAGAAATTCAGCCAATTGTGACCAGTTCTAGTGGTCGaattatcaaaagaaaacTTCCAAATGTTCTTCCACAATTGCCTTATCGtccaaataattttcaaaaacgaACAAATGTTTCTTTTATGTGTGACATTTGTGGTATTAAAATGGAAACAAAAGCGAATCTTACATCACATTTATTAACTCATTATAaggaaaaaagtcaaaaatgtcAACATTGTGATGAATCTTTTCCAAATATGCATGCACTTAAGCAACATTGTGCTAGAGAGcatcaaataaatgaaaattcgtCTAAAGAAAAACGCTTTGAATGCGATCAATGTGGTAAACGATACATCACAGCACATCTTCTTGGAATTCATAAGAAATCACATGAAAATCTTCGTGAATTTAAATGCACACATGAAGGTTGTCGATTTGCTACAAATTCACCTTATGATCTTAAAACTCATATTAAACGTATGCATAATGCAACAAAACCATTTGAATGTCCactttgtaataaaaaattcaaaagacgTTGTGATATGTTGTATCATAAAGATTCAATTCATTGCGATGTGAAAACTTATGTCAAATGTCCAGTTTGTGCTAAAATTATTCTCGAACGAGGTCTTCAAAGTCACATGATAAATCGACATTCAGAAAAGGCACAAATTAAACCATTTGAATGCAGTATTTGTGGTAAAAAGGAGCGATATGAGCGAGCATTACAAAGACATTATGATGCAGTTCATGAACCAAAAGATCGTGGTGTTAGTTATCAATGTCCAGAATGTCCTGCAACTTTCTATCGACGACGTGACATGAGTGCACACTCATTTGAACATTATActggtgaaatttttgaatgctcAACTTGtggaaataaatataaaagtaaaaaagaattgacaAATCATGAATATAGTCATCGAGTTGTTGAATATCCTTGTaatatttgtaataaaatttttcaaacaaaatctGGTCGAGGTAAACACATGaggaaacatttttcaaaaaaagattatcCAACAactgaagatgatgatgttgaaacTGTCATTGATgacaatgaaattatttatgaagaatatgaaattttagaagaagCTGAACAACTTGTtaatgttgaataa
- Protein Sequence
- MSQIGQEQHYKVIQVFQQQDVITEEVDLIEYEPEEGEGGEVVYELVELAQPSVEIKTGLYDKSINDNKFRCANRVCKRRNIVYDTKEELDVHNEVHIEQYRNAICPICNKELANSAKLEVHIELRHTPRHFTCDQCGKVFRSKDNLRLHMSHHRKYFHVECKACGRGYKSIQSLRYHLRQHFEHHQCETCGKVFEHKKLLLGHVAAMHNQDLQVHCRYCTRTFARSDVRDAHERDIHKNGAVTSHFKCNECTESFDLRDDLMSHKILNHFSGVIHTCEECGKNFKKKSLLDLHMNVHRKKSISCDVCKQMFTFITGLNKHKKLGRCKGPPSESLADVLTKEEIARIAKAQLQEITVNPKKDVEEEEETFEPEITIKKEFTVKKKAGRKPKVEKIEISKVTEEPMEVYEVEEIQPIVTSSSGRIIKRKLPNVLPQLPYRPNNFQKRTNVSFMCDICGIKMETKANLTSHLLTHYKEKSQKCQHCDESFPNMHALKQHCAREHQINENSSKEKRFECDQCGKRYITAHLLGIHKKSHENLREFKCTHEGCRFATNSPYDLKTHIKRMHNATKPFECPLCNKKFKRRCDMLYHKDSIHCDVKTYVKCPVCAKIILERGLQSHMINRHSEKAQIKPFECSICGKKERYERALQRHYDAVHEPKDRGVSYQCPECPATFYRRRDMSAHSFEHYTGEIFECSTCGNKYKSKKELTNHEYSHRVVEYPCNICNKIFQTKSGRGKHMRKHFSKKDYPTTEDDDVETVIDDNEIIYEEYEILEEAEQLVNVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01249350;
- 90% Identity
- -
- 80% Identity
- -