Basic Information

Insect: Polypedilum vanderplanki
Gene Symbol: -
Assembly: GCA_018290095.1
Location: CM031379.1:28797449-28799151[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 3e-06 0.00014 22.1 3.0 1 23 173 195 173 195 0.98

2 12 0.00047 0.021 15.2 0.2 1 23 202 226 202 226 0.94

3 12 0.031 1.4 9.5 0.6 2 21 241 260 240 262 0.93

4 12 9.5e-07 4.3e-05 23.7 1.6 1 23 271 293 271 293 0.98

5 12 1.5e-05 0.0007 19.9 2.1 1 23 299 321 299 321 0.99

6 12 2.3e-06 0.0001 22.5 4.0 1 23 327 349 327 349 0.97

7 12 2.7e-07 1.2e-05 25.4 0.8 1 23 355 377 355 377 0.95

8 12 0.0049 0.22 12.0 1.5 1 23 383 405 383 405 0.97

9 12 4.1e-05 0.0019 18.5 2.7 1 23 411 434 411 434 0.97

10 12 5.7e-05 0.0026 18.1 6.8 1 23 440 462 440 462 0.98

11 12 3e-06 0.00014 22.1 1.2 1 23 468 490 468 490 0.98

12 12 0.00038 0.017 15.5 0.7 1 23 496 520 496 520 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	3e-06	0.00014	22.1	3.0	1	23	173	195	173	195	0.98
2	12	0.00047	0.021	15.2	0.2	1	23	202	226	202	226	0.94
3	12	0.031	1.4	9.5	0.6	2	21	241	260	240	262	0.93
4	12	9.5e-07	4.3e-05	23.7	1.6	1	23	271	293	271	293	0.98
5	12	1.5e-05	0.0007	19.9	2.1	1	23	299	321	299	321	0.99
6	12	2.3e-06	0.0001	22.5	4.0	1	23	327	349	327	349	0.97
7	12	2.7e-07	1.2e-05	25.4	0.8	1	23	355	377	355	377	0.95
8	12	0.0049	0.22	12.0	1.5	1	23	383	405	383	405	0.97
9	12	4.1e-05	0.0019	18.5	2.7	1	23	411	434	411	434	0.97
10	12	5.7e-05	0.0026	18.1	6.8	1	23	440	462	440	462	0.98
11	12	3e-06	0.00014	22.1	1.2	1	23	468	490	468	490	0.98
12	12	0.00038	0.017	15.5	0.7	1	23	496	520	496	520	0.98

Sequence Information

Coding Sequence: atggtGTCAATTAGTAATTTATGTAGATTATGTCTAACCCAAATTGAAGATGGAGGAAAATCACTTTTCGAGTcatatattgaaaatgtaCCAACTTTAGAAAtagcaacaaaaatttgttataaaattaatatgcAAATTGGAGATAAATTTCCTGAATATATTTGCAATGAGTGCTTTACTTTATTAGAGAATGCTCATATTCTTAGTGAAAAAAGTATTCAGAGTGAAAGACAACTTATGCTCATGATTTCATCAGTGTCTCTAATTAAAGAAGAGATACCatttgaagatgatgaagatttcgcatcaaaattaaacatttgtAATATAGTTTGTAATGATATTTCAATAGCAAATGCAGTTGAAGTtgaaatagacaaaaaaattgaatttgatgacgatgatgatgatgatgatgaacaagAGCAACAACAAGAAAATGAGCAAATAGAAATCGATGATCctaattttaatgaatcatcattgaaaaagtcaaaaaaagttttaaaaaaacataaatgcAATGTATGTGACAAACGTTTTGAAAAACCATCCAAATTAATAAGACACGAAAAAACACACGATGTTAATAAAAAGCCTTTTGCTTGTGAGGAACCAGACTGTTTTCAAAGATTTCAAACTTCTGCTTCACTTCAGAGACATCAAATTGTACATTCTggaatgacaataaaaattgcacCGGATAATAGAAATTGGTCATGTGTGGTGTGTGCAAAAGAATTTGATTCTCAAGAGTCAATGGCATCACATATGAGGTGTCATAAAGaagaaatggaaaaacttgaatttccTTGCAATTTATGCACTAAAgtgttcaaaaaattaaatgaattgacAAGACACTTACGAACAcatcaagaaaataaaaattataaatgtcaaatatgtaataaattattttcacaagGATCACATTTAATTGATCATCTTAACCGTCACAAAGGAATTAAGCCACACATATGCAACATTTGTCATAAATCTTTTCAACAAAGTTCAACTTTGAAAGATCATATTCGTGTTCATTCTTCAGATAAACCATTTCTTTGTAGTACTTGTGGAAAGGCATTCAATAATCCGAGTAATTTGAGGCAACATGTAAAAAgacatcaaaatattaaagattttGCATGCGAATTATGTCCGTCAAAATTTTCCTGTAAAGcAAGCCTTCAATCACACATAAGATCTCataatggaataaaaaatcatactTGCCAAACATGTGGCTCATCATTCACAAAAGGAAGTTCATTAAAGAAGCATATTAGATCTATTCATGAAGGAATAAAAGATCATCAATGTTCTACATGctcaatgaaatttacaaGCAGTGAGCATTTAAAACGACATTATCGCGTGCACTCGGGAGAAAAACCTTATAAATGTGATCAATGTGATAAAGCTTATTCACAATctaatgatttattgaaacaCAAAAAGATACATATTGGAGAAAATATCTACAAATGCACATACGAAAATTGCAATGAAGCATTTAGATTAAAATCATTACTACGTGATCATTATATTGTTCATAAAAGAATCacagatgaaaataattcggaataa
Protein Sequence: MVSISNLCRLCLTQIEDGGKSLFESYIENVPTLEIATKICYKINMQIGDKFPEYICNECFTLLENAHILSEKSIQSERQLMLMISSVSLIKEEIPFEDDEDFASKLNICNIVCNDISIANAVEVEIDKKIEFDDDDDDDDEQEQQQENEQIEIDDPNFNESSLKKSKKVLKKHKCNVCDKRFEKPSKLIRHEKTHDVNKKPFACEEPDCFQRFQTSASLQRHQIVHSGMTIKIAPDNRNWSCVVCAKEFDSQESMASHMRCHKEEMEKLEFPCNLCTKVFKKLNELTRHLRTHQENKNYKCQICNKLFSQGSHLIDHLNRHKGIKPHICNICHKSFQQSSTLKDHIRVHSSDKPFLCSTCGKAFNNPSNLRQHVKRHQNIKDFACELCPSKFSCKASLQSHIRSHNGIKNHTCQTCGSSFTKGSSLKKHIRSIHEGIKDHQCSTCSMKFTSSEHLKRHYRVHSGEKPYKCDQCDKAYSQSNDLLKHKKIHIGENIYKCTYENCNEAFRLKSLLRDHYIVHKRITDENNSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01249341;
90% Identity: -
80% Identity: -