Basic Information

Insect: Polypedilum pembai
Gene Symbol: -
Assembly: GCA_014622435.1
Location: JACWBX010000822.1:16278-17909[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 6.7e-06 0.00031 21.0 2.8 1 23 165 187 165 187 0.98

2 12 0.0014 0.067 13.6 0.2 1 23 194 218 194 218 0.95

3 12 0.015 0.7 10.4 0.4 2 21 233 252 232 254 0.93

4 12 9.1e-07 4.2e-05 23.7 1.6 1 23 263 285 263 285 0.98

5 12 1.5e-05 0.00068 19.9 2.1 1 23 291 313 291 313 0.99

6 12 6.6e-07 3e-05 24.2 4.0 1 23 319 341 319 341 0.98

7 12 1.5e-07 6.9e-06 26.2 1.4 1 23 347 369 347 369 0.95

8 12 0.0047 0.22 12.0 1.5 1 23 375 397 375 397 0.97

9 12 4e-05 0.0018 18.6 2.7 1 23 403 426 403 426 0.97

10 12 4.1e-06 0.00019 21.7 5.8 1 23 432 454 432 454 0.99

11 12 2e-06 9.3e-05 22.6 2.5 1 23 460 482 460 482 0.98

12 12 0.00036 0.017 15.5 0.7 1 23 488 512 488 512 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	6.7e-06	0.00031	21.0	2.8	1	23	165	187	165	187	0.98
2	12	0.0014	0.067	13.6	0.2	1	23	194	218	194	218	0.95
3	12	0.015	0.7	10.4	0.4	2	21	233	252	232	254	0.93
4	12	9.1e-07	4.2e-05	23.7	1.6	1	23	263	285	263	285	0.98
5	12	1.5e-05	0.00068	19.9	2.1	1	23	291	313	291	313	0.99
6	12	6.6e-07	3e-05	24.2	4.0	1	23	319	341	319	341	0.98
7	12	1.5e-07	6.9e-06	26.2	1.4	1	23	347	369	347	369	0.95
8	12	0.0047	0.22	12.0	1.5	1	23	375	397	375	397	0.97
9	12	4e-05	0.0018	18.6	2.7	1	23	403	426	403	426	0.97
10	12	4.1e-06	0.00019	21.7	5.8	1	23	432	454	432	454	0.99
11	12	2e-06	9.3e-05	22.6	2.5	1	23	460	482	460	482	0.98
12	12	0.00036	0.017	15.5	0.7	1	23	488	512	488	512	0.98

Sequence Information

Coding Sequence: ATGGAGTCCAAATATAGTTTATGTAGATTATGTTTAATGAAAATTGAAAATGGAGGAAAATCACTTTTTGAGTCATACATCGAAACTGTTCCAACTATAGAGATCGCAACGAAAGTTTGTTACAAAATTCATATGCAAATTGGTGATAGGTTTCCTGAATATATCTGCAATGAATGCTTTAATATATTAGAAAATGCTCATATGCTTTGTGAAAGAAGCATACAAAGTGAAAAGCAATTGATGTTAATGATTACATCAGTATCAATTAAAGAAGAACTGCAGTTTGACGGTGATGAAGTTTTCGAATCTAAGCTTAACATTTGTAATATAGTTAGTAATGATATTTCAATAGCTAATGTAGTTGAAGATGAAATTGAAAAGAAAATTGAGTTTGATGACGATGAACAAGAGCAGGAACAAGAAGAAATTGATGAAGCTGATCCGAATTATGATGAAACTTTACAAATAAATTTAAAGAAAGTCACAAAGAAACATAAATGCAGTGTTTGTGATAAGATGTTTGATAAACCGTCAAAATTATTGAGACATGAGAAGACACATGATGCCAATAAAAAACCTTTTGCTTGTGAAGAGGCAGACTGTTTTCAAAGATTTCAAACGTTAGCTTCACTTCAAAGGCATCAAATTATACATTCAGGAATGACTATCAAAATTGCACCTGATAACAGAAACTGGCCATGTGTGATATGTGCAAAAGAGTTTGAATCGCAAGAATCAATGGCATCACACATGAGATGTCACAAAGATGAAATGGAAAAACTTGAATTCCCCTGCAACCTTTGCACGAAAGTTTTTAAAAAATTAAATGAATTGACAAGACATTTACGGACACATAAAGAAAATAAAAATTACAAATGTCAAATTTGCAATAAGTTATTTTCCCAAGGTTCACATTTAATTGATCATTTAAATCGTCATAAAGGACTTAAACCACACACATGCAACATATGCAATAAATCTTTTCAACAGAGTTCAACTTTGAAAGATCATTTACGAACTCATTCTTCAGATAAGCCATTCCTTTGTAGTACTTGTGGTAAAAGTTTTAACAATCCCAGTAACTTGAGACAACACGTGAAAAGACATCAGAATTTAAAAGAGTTCGCTTGTGAATTGTGTCCATCAAAATTTTCATGTAAAGCTAGTCTTCAGTCACACATAAGATCACACAATGGCATTAAAAATCATACTTGTCAAACATGTGGCTCTTCTTTCACTAAAGGAAGTTCATTAAAAAAACATATTCGATCAATTCATGAAGGAATTAAAGACTATCAATGTTCAACTTGTTCAATGAGATTTACAAGTAGTGAGCATTTGAAGAGACATTATCGAACACACTCTGGAGAGAAACCTTATCGTTGCCACATCTGTGACAAAGCTTACTCACAATCGAATGATTTATTAAAGCATAAGAAAATTCACATTGGTGAAAATGTCTATAAATGCACATACGAAAATTGCAATGAAGCATTCAGATTAAAATCATTACTTCGAGATCACTATATTGTCCACAAAAGAATCACAGATGAAGAAAAATCACAATGA
Protein Sequence: MESKYSLCRLCLMKIENGGKSLFESYIETVPTIEIATKVCYKIHMQIGDRFPEYICNECFNILENAHMLCERSIQSEKQLMLMITSVSIKEELQFDGDEVFESKLNICNIVSNDISIANVVEDEIEKKIEFDDDEQEQEQEEIDEADPNYDETLQINLKKVTKKHKCSVCDKMFDKPSKLLRHEKTHDANKKPFACEEADCFQRFQTLASLQRHQIIHSGMTIKIAPDNRNWPCVICAKEFESQESMASHMRCHKDEMEKLEFPCNLCTKVFKKLNELTRHLRTHKENKNYKCQICNKLFSQGSHLIDHLNRHKGLKPHTCNICNKSFQQSSTLKDHLRTHSSDKPFLCSTCGKSFNNPSNLRQHVKRHQNLKEFACELCPSKFSCKASLQSHIRSHNGIKNHTCQTCGSSFTKGSSLKKHIRSIHEGIKDYQCSTCSMRFTSSEHLKRHYRTHSGEKPYRCHICDKAYSQSNDLLKHKKIHIGENVYKCTYENCNEAFRLKSLLRDHYIVHKRITDEEKSQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01250355;
90% Identity: -
80% Identity: -